[med-svn] [Git][med-team/gffread][master] 4 commits: Revert "d/t/*: work around uninstallable packages."

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / gffread


Commits:
35f114ee by Étienne Mollier at 2024-06-20T20:41:51+02:00
Revert "d/t/*: work around uninstallable packages."

This reverts commit 7f28a236e8757d9fce7af87b806e38ddcb61a9b2, brought
in the previous package upload.  Quoting Adrian: trinityrnaseq is back
in testing, and boost now defaults to 1.83.

Closes: #1073921
Thanks: Adrian Bunk

- - - - -
88b90b60 by Étienne Mollier at 2024-06-20T20:45:39+02:00
d/control: declare compliance to standards version 4.7.0.

- - - - -
b178b480 by Étienne Mollier at 2024-06-20T20:51:46+02:00
d/control: add myself to uploaders.

- - - - -
f86cecfd by Étienne Mollier at 2024-06-20T20:52:11+02:00
ready to upload to unstable.

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/tests/control
- debian/tests/run-tests


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,15 @@
+gffread (0.12.7-5) unstable; urgency=medium
+
+  * Revert "d/t/*: work around uninstallable packages."
+    This reverts commit 7f28a236e8757d9fce7af87b806e38ddcb61a9b2, brought
+    in the previous package upload.  Quoting Adrian: trinityrnaseq is back
+    in testing, and boost now defaults to 1.83.
+    Thanks to Adrian Bunk (Closes: #1073921)
+  * d/control: declare compliance to standards version 4.7.0.
+  * d/control: add myself to uploaders.
+
+ -- Étienne Mollier <emollier at debian.org>  Thu, 20 Jun 2024 20:52:03 +0200
+
 gffread (0.12.7-4) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -2,12 +2,13 @@ Source: gffread
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Andreas Tille <tille at debian.org>,
            Michael R. Crusoe <crusoe at debian.org>,
-           Steffen Moeller <moeller at debian.org>
+           Steffen Moeller <moeller at debian.org>,
+           Étienne Mollier <emollier at debian.org>
 Section: science
 Priority: optional
 Build-Depends: debhelper-compat (= 13),
                libgclib-dev
-Standards-Version: 4.6.2
+Standards-Version: 4.7.0
 Vcs-Browser: https://salsa.debian.org/med-team/gffread
 Vcs-Git: https://salsa.debian.org/med-team/gffread.git
 Homepage: https://ccb.jhu.edu/software/stringtie/gff.shtml


=====================================
debian/tests/control
=====================================
@@ -1,6 +1,3 @@
 Tests: run-tests
-# FIXME: put back trinityrnaseq-examples when available in testing.
-# FIXME: put back r-bioc-gviz, r-bioc-genomicfeatures, r-bioc-rhtslib
-#        and r-bioc-rtracklayer, when boost 1.81 transition is ended.
-Depends: gffread, bash, augustus-doc, bedtools-test, cnvkit [amd64 arm64 ppc64el], emboss-data, emboss-test, gbrowse, genometools-common, gff2aplot, gff2ps, htslib-test, libbio-graphics-perl, optimir [amd64 arm64 ppc64el], proteinortho [amd64 arm64 ppc64el s390x], python3-gffutils, python3-pybedtools [amd64 arm64 ppc64el], seqan-apps, spades [amd64], dpkg-dev
+Depends: gffread, bash, augustus-doc, bedtools-test, cnvkit [amd64 arm64 ppc64el], emboss-data, emboss-test, gbrowse, genometools-common, gff2aplot, gff2ps, htslib-test, libbio-graphics-perl, optimir [amd64 arm64 ppc64el], proteinortho [amd64 arm64 ppc64el s390x], python3-gffutils, python3-pybedtools [amd64 arm64 ppc64el], r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps, spades [amd64], trinityrnaseq-examples, dpkg-dev
 Restrictions: allow-stderr


=====================================
debian/tests/run-tests
=====================================
@@ -10,10 +10,7 @@ cd "$AUTOPKGTEST_TMP"
 # generated via
 # apt-file search --package-only --regexp '\.gff.?$' | grep -v -E "bedops|cct|ugene|gbrowse-data"
 
-# FIXME: put back trinityrnaseq-examples when available in testing.
-# FIXME: put back r-bioc-gviz, r-bioc-genomicfeatures, r-bioc-rhtslib,
-#        r-bioc-rtracklayer when boost 1.81 transition is ended.
-PACKAGES="augustus-doc, bedtools-test, emboss-data, emboss-test, gbrowse, genometools-common, gff2aplot, gff2ps, htslib-test, libbio-graphics-perl, python3-gffutils, seqan-apps"
+PACKAGES="augustus-doc, bedtools-test, emboss-data, emboss-test, gbrowse, genometools-common, gff2aplot, gff2ps, htslib-test, libbio-graphics-perl, python3-gffutils, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps, trinityrnaseq-examples"
 
 if [ "$(dpkg-architecture -qDEB_BUILD_ARCH)" = "amd64" ] ; then
 	PACKAGES+=", cnvkit, optimir, proteinortho, python3-pybedtools, spades"



View it on GitLab: https://salsa.debian.org/med-team/gffread/-/compare/be85c58433aa62a1e7754fd5420b5a969df493be...f86cecfdb23fd716e57eef4979d80d74bf513069

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