[med-svn] [Git][med-team/q2-cutadapt][master] 6 commits: routine-update: New upstream version
Michael R. Crusoe (@crusoe)
gitlab at salsa.debian.org
Tue Jun 25 03:39:00 BST 2024
Michael R. Crusoe pushed to branch master at Debian Med / q2-cutadapt
Commits:
74e2dafb by Michael R. Crusoe at 2024-06-25T04:20:33+02:00
routine-update: New upstream version
- - - - -
dcdb6e5a by Michael R. Crusoe at 2024-06-25T04:20:34+02:00
New upstream version 2024.5.0
- - - - -
14c4fa6c by Michael R. Crusoe at 2024-06-25T04:20:37+02:00
Update upstream source from tag 'upstream/2024.5.0'
Update to upstream version '2024.5.0'
with Debian dir 586a269b9f9606896e0f693b2fba3e9383f0e784
- - - - -
b0b576c7 by Michael R. Crusoe at 2024-06-25T04:21:07+02:00
routine-update: Regenerate debian/control from debian/control.in
- - - - -
7e67b05c by Michael R. Crusoe at 2024-06-25T04:27:07+02:00
d/patches/configparser.patch: copy from qiime
- - - - -
eb3dd18e by Michael R. Crusoe at 2024-06-25T04:27:07+02:00
routine-update: Ready to upload to unstable
- - - - -
6 changed files:
- debian/changelog
- debian/control
- + debian/patches/configparser.patch
- debian/patches/series
- debian/patches/skip-test-needing-internet.patch
- q2_cutadapt/_version.py
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+q2-cutadapt (2024.5.0-1) unstable; urgency=medium
+
+ * Team upload.
+ * New upstream version
+ * Regenerate debian/control from debian/control.in (routine-update)
+ * d/patches/configparser.patch: copy from qiime
+
+ -- Michael R. Crusoe <crusoe at debian.org> Tue, 25 Jun 2024 04:21:07 +0200
+
q2-cutadapt (2024.2.0-1) unstable; urgency=medium
* Team upload.
=====================================
debian/control
=====================================
@@ -11,8 +11,8 @@ Build-Depends: debhelper-compat (= 13),
python3-pytest-cov,
python3-pandas,
cutadapt,
- qiime (>= 2024.2),
- q2-types (>= 2024.2)
+ qiime (>= 2024.5),
+ q2-types (>= 2024.5)
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/q2-cutadapt
Vcs-Git: https://salsa.debian.org/med-team/q2-cutadapt.git
@@ -28,8 +28,8 @@ Depends: ${shlibs:Depends},
python3-pandas,
cutadapt,
pigz,
- qiime (>= 2024.2),
- q2-types (>= 2024.2)
+ qiime (>= 2024.5),
+ q2-types (>= 2024.5)
Description: QIIME 2 plugin to work with adapters in sequence data
QIIME 2 is a powerful, extensible, and decentralized microbiome analysis
package with a focus on data and analysis transparency. QIIME 2 enables
=====================================
debian/patches/configparser.patch
=====================================
@@ -0,0 +1,27 @@
+From: Athos Ribeiro <athos.ribeiro at canonical.com>
+Date: Mon, 3 Jun 2024 11:31:54 -0300
+Subject: Use ConfigParser instead of SafeConfigParser
+
+The configparser's SafeConfigParser has been renamed to ConfigParser in
+Python 3.2 [1]. It was finally removed in Python 3.12 [2].
+
+[1] https://docs.python.org/dev/whatsnew/3.2.html#configparser
+[2] https://docs.python.org/3/whatsnew/3.12.html#configparser
+
+Last-Update: 2024-06-03
+Forwarded: not-needed, see https://github.com/qiime2/q2-sample-classifier/pull/229
+
+--- q2-types.orig/versioneer.py
++++ q2-types/versioneer.py
+@@ -340,9 +340,9 @@
+ # configparser.NoOptionError (if it lacks "VCS="). See the docstring at
+ # the top of versioneer.py for instructions on writing your setup.cfg .
+ setup_cfg = os.path.join(root, "setup.cfg")
+- parser = configparser.SafeConfigParser()
++ parser = configparser.ConfigParser()
+ with open(setup_cfg, "r") as f:
+- parser.readfp(f)
++ parser.read_file(f)
+ VCS = parser.get("versioneer", "VCS") # mandatory
+
+ def get(parser, name):
=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
+configparser.patch
skip-test-needing-internet.patch
=====================================
debian/patches/skip-test-needing-internet.patch
=====================================
@@ -14,7 +14,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
import pandas as pd
-@@ -779,6 +780,7 @@
+@@ -1195,6 +1196,7 @@
self.assertTrue(reverse.path.is_file())
=====================================
q2_cutadapt/_version.py
=====================================
@@ -23,9 +23,9 @@ def get_keywords():
# setup.py/versioneer.py will grep for the variable names, so they must
# each be defined on a line of their own. _version.py will just call
# get_keywords().
- git_refnames = " (tag: 2024.2.0, Release-2024.2)"
- git_full = "aee8d31a9f1517824d9bda653dc525a8c8721cfb"
- git_date = "2024-02-16 21:55:34 +0000"
+ git_refnames = " (tag: 2024.5.0, Release-2024.5)"
+ git_full = "c5cfac6ad68d588e622241791bd23c3e32f66e37"
+ git_date = "2024-05-29 04:13:43 +0000"
keywords = {"refnames": git_refnames, "full": git_full, "date": git_date}
return keywords
View it on GitLab: https://salsa.debian.org/med-team/q2-cutadapt/-/compare/810e73612b5338f8e00ad7b737e0b8937f3e67d5...eb3dd18e28440594dfd67375dc8009cbdd6d483e
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View it on GitLab: https://salsa.debian.org/med-team/q2-cutadapt/-/compare/810e73612b5338f8e00ad7b737e0b8937f3e67d5...eb3dd18e28440594dfd67375dc8009cbdd6d483e
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