[med-svn] [Git][med-team/deblur][master] 5 commits: routine-update: Packaging update

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / deblur


Commits:
aee5d164 by Michael R. Crusoe at 2024-06-25T21:44:13+02:00
routine-update: Packaging update

- - - - -
5c11fe4f by Michael R. Crusoe at 2024-06-25T21:44:22+02:00
Set upstream metadata fields: Repository.

Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html

- - - - -
4b65876e by Michael R. Crusoe at 2024-06-25T22:22:53+02:00
d/rules: simplified

- - - - -
ecf9e9d0 by Michael R. Crusoe at 2024-06-25T22:22:55+02:00
Tests: copy the test files to the pybuild directory

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93ba416f by Michael R. Crusoe at 2024-06-25T22:23:40+02:00
TODO: add patch to support sormerna 4.x

- - - - -


6 changed files:

- debian/changelog
- + debian/clean
- debian/control
- + debian/pybuild.testfiles
- debian/rules
- debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+deblur (1.1.1-2) UNRELEASED; urgency=medium
+
+  * Team upload.
+  * Set upstream metadata fields: Repository.
+  * d/rules: simplified
+  * Tests: copy the test files to the pybuild directory
+  * TODO: add patch to support sormerna 4.x
+
+ -- Michael R. Crusoe <crusoe at debian.org>  Tue, 25 Jun 2024 21:44:13 +0200
+
 deblur (1.1.1-1) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/clean
=====================================
@@ -0,0 +1 @@
+deblur.log


=====================================
debian/control
=====================================
@@ -7,7 +7,9 @@ Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-setuptools,
                python3-skbio,
                python3-biom-format,
                sortmerna (>> 4~),
-               vsearch
+               vsearch,
+               python3-nose <!nocheck>,
+               mafft <!nocheck>
 Standards-Version: 4.6.2
 Homepage: https://github.com/biocore/deblur
 Vcs-Browser: https://salsa.debian.org/med-team/deblur


=====================================
debian/pybuild.testfiles
=====================================
@@ -0,0 +1,2 @@
+deblur/test
+deblur/test/data


=====================================
debian/rules
=====================================
@@ -4,13 +4,8 @@
 #export DH_VERBOSE = 1
 
 export PYBUILD_NAME=deblur
+export PYBUILD_TEST_NOSE=1
+export PYBUILD_DISABLE=test
 
 %:
 	dh $@ --buildsystem=pybuild
-
-override_dh_auto_test:
-	PATH=$$PATH:$(CURDIR)/build/scripts-3.8/ PYTHONPATH=$(CURDIR) nosetests3 || echo ignoring failed tests
-
-override_dh_auto_clean:
-	dh_auto_clean
-	rm -f deblur.log


=====================================
debian/upstream/metadata
=====================================
@@ -1,4 +1,5 @@
 ---
 Bug-Database: https://github.com/biocore/deblur/issues
 Bug-Submit: https://github.com/biocore/deblur/issues/new
+Repository: https://github.com/biocore/deblur.git
 Repository-Browse: https://github.com/biocore/deblur



View it on GitLab: https://salsa.debian.org/med-team/deblur/-/compare/0c74c10e024f8d214f66fea9e0ab718c921217f3...93ba416fc54f044c0bd53c0bc7948b49b2fb1cfd

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