[med-svn] [Git][med-team/python-gffutils][master] 3 commits: d/patches: add pytest 8.x compatability. Closes: #1063974

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / python-gffutils


Commits:
f3483d0a by Michael R. Crusoe at 2024-03-06T09:42:18+01:00
d/patches: add pytest 8.x compatability. Closes: #1063974

- - - - -
7d682023 by Michael R. Crusoe at 2024-03-06T09:53:57+01:00
routine-update: Build-Depends: s/dh-python/dh-sequence-python3/

- - - - -
55f2ffe3 by Michael R. Crusoe at 2024-03-06T09:54:18+01:00
routine-update: Ready to upload to unstable

- - - - -


5 changed files:

- debian/changelog
- debian/control
- + debian/patches/pytest8
- debian/patches/series
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+python-gffutils (0.12-3) unstable; urgency=medium
+
+  * d/patches: add pytest 8.x compatability. Closes: #1063974
+  * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
+
+ -- Michael R. Crusoe <crusoe at debian.org>  Wed, 06 Mar 2024 09:54:18 +0100
+
 python-gffutils (0.12-2) unstable; urgency=medium
 
   * Team Upload.


=====================================
debian/control
=====================================
@@ -6,7 +6,7 @@ Uploaders: Michael R. Crusoe <crusoe at debian.org>,
 Section: science
 Priority: optional
 Build-Depends: debhelper-compat (= 13),
-               dh-python,
+               dh-sequence-python3,
                bedtools,
                python3-all,
                python3-setuptools,


=====================================
debian/patches/pytest8
=====================================
@@ -0,0 +1,30 @@
+From: Michael R. Crusoe <crusoe at debian.org>
+Subject: Add pytest 8.x compat
+
+Works with Pytest 7.x+
+--- python-gffutils.orig/gffutils/test/feature_test.py
++++ python-gffutils/gffutils/test/feature_test.py
+@@ -152,10 +152,10 @@
+     namespace or something?  Anyway, these setup/teardowns do the trick.
+     """
+ 
+-    def setup(self):
++    def setup_method(self):
+         constants.always_return_list = False
+ 
+-    def teardown(self):
++    def teardown_method(self):
+         constants.always_return_list = True
+ 
+     def test_feature_single_item(self):
+--- python-gffutils.orig/gffutils/test/test_1.py
++++ python-gffutils/gffutils/test/test_1.py
+@@ -193,7 +193,7 @@
+ 
+     orig_fn = None
+ 
+-    def setup(self):
++    def setup_method(self):
+         def gff_id_func(f):
+             if "ID" in f.attributes:
+                 return f.attributes["ID"][0]


=====================================
debian/patches/series
=====================================
@@ -1,3 +1,4 @@
+pytest8
 newer_bedtools
 python3
 fix-version.patch


=====================================
debian/rules
=====================================
@@ -11,7 +11,7 @@ export PYBUILD_TEST_PYTEST=true
 export PYBUILD_AFTER_TEST=find . -name tmp.db -delete
 
 %:
-	dh $@ --with python3 --buildsystem=pybuild
+	dh $@ --buildsystem=pybuild
 
 override_dh_auto_build:
 	dh_auto_build



View it on GitLab: https://salsa.debian.org/med-team/python-gffutils/-/compare/d2aee323e1e8a70f01252abbf1a2141a08c94d05...55f2ffe3a5f4c3466362748ae3d79c078231064c

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-gffutils/-/compare/d2aee323e1e8a70f01252abbf1a2141a08c94d05...55f2ffe3a5f4c3466362748ae3d79c078231064c
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