[med-svn] [Git][med-team/python-biopython][debian/unstable] 18 commits: routine-update: New upstream version

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch debian/unstable at Debian Med / python-biopython


Commits:
c18efe28 by Étienne Mollier at 2023-07-09T18:28:38+02:00
routine-update: New upstream version

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72c970f0 by Étienne Mollier at 2023-07-09T18:28:39+02:00
New upstream version 1.81+dfsg
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5f104be7 by Étienne Mollier at 2023-07-09T18:28:50+02:00
Update upstream source from tag 'upstream/1.81+dfsg'

Update to upstream version '1.81+dfsg'
with Debian dir 7a48e221fad6109faec3c6243f19e4276e572dbf
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d70655f7 by Étienne Mollier at 2023-07-09T18:29:54+02:00
d/control: remove obsolete version constraint on dssp.

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b6464225 by Étienne Mollier at 2023-07-09T18:30:30+02:00
numpy-1.24.patch: remove: applied upstream.

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5f317f3a by Étienne Mollier at 2023-07-09T19:02:48+02:00
muscle3.patch: fix typo in patch description.

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63cbd906 by Étienne Mollier at 2023-07-09T20:17:45+02:00
remove-distutils-import.patch: add.

The occurrence to distutils.util doesn't look to be in use.  Lintian
flags its presence, so it might be better to just remove it.

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b99f8b6c by Étienne Mollier at 2023-07-09T20:22:08+02:00
ready to upload to experimental.

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584dc3e1 by Étienne Mollier at 2023-07-10T22:49:46+02:00
Merge branch 'debian/unstable'

Inline python-biopython 1.80+dfsg-6 between -5 and 1.81+dfsg-0+exp1.

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bcbcdd8f by Étienne Mollier at 2023-07-10T22:52:12+02:00
update changelog

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02cbab7a by Étienne Mollier at 2023-07-14T12:00:42+02:00
ready to upload to unstable

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2b7721ec by Étienne Mollier at 2023-07-14T14:36:30+02:00
d/gbp.conf: delete.

It's use was temporary for handling the divergence between unstable
and experimental, but it's unneeded after merging back the two
branches.

Gbp-Dch: ignore

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f12e89a6 by Étienne Mollier at 2023-11-10T23:22:09+01:00
python3.12.patch: new: fix ftbfs with python3.12

Thanks: Antonio
Closes: #1055708

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1625e305 by Étienne Mollier at 2023-11-11T10:21:05+01:00
d/control: remove obsolete comment.

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74f35321 by Étienne Mollier at 2023-11-11T11:15:41+01:00
d/control: move to dh-sequence-python3.

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c15a9b8e by Étienne Mollier at 2023-11-11T15:42:31+01:00
ready to upload to unstable

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0494ff37 by Étienne Mollier at 2023-12-19T15:05:55+01:00
d/control: remove dependency on python3-unittest2.

Closes: #1058967

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1adc4dd3 by Étienne Mollier at 2023-12-19T15:06:58+01:00
ready to upload to unstable.

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30 changed files:

- .flake8
- .pre-commit-config.yaml
- Bio/Align/__init__.py
- Bio/Align/_aligners.c
- Bio/Align/a2m.py
- Bio/Align/bed.py
- Bio/Align/bigbed.py
- Bio/Align/bigmaf.py
- Bio/Align/bigpsl.py
- Bio/Align/clustal.py
- Bio/Align/emboss.py
- Bio/Align/exonerate.py
- Bio/Align/fasta.py
- Bio/Align/hhr.py
- Bio/Align/interfaces.py
- Bio/Align/maf.py
- Bio/Align/mauve.py
- Bio/Align/msf.py
- Bio/Align/nexus.py
- Bio/Align/phylip.py
- Bio/Align/psl.py
- Bio/Align/sam.py
- Bio/Align/stockholm.py
- Bio/Align/tabular.py
- Bio/CAPS/__init__.py
- Bio/Data/PDBData.py
- Bio/Data/SCOPData.py
- + Bio/Entrez/DTDs/elink.dtd
- + Bio/Entrez/DTDs/epost.dtd
- + Bio/Entrez/DTDs/esummary_gene.dtd


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/1f16c6326af1314093efed52e6850848d46e9359...1adc4dd3bf3620413a247167011b55ffae6cbf43

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View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/1f16c6326af1314093efed52e6850848d46e9359...1adc4dd3bf3620413a247167011b55ffae6cbf43
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