[med-svn] [Git][med-team/poa][master] 7 commits: d/control: add myself to uploaders.
Étienne Mollier (@emollier)
gitlab at salsa.debian.org
Wed Mar 13 21:15:42 GMT 2024
Étienne Mollier pushed to branch master at Debian Med / poa
Commits:
ce3876cd by Étienne Mollier at 2024-03-13T21:54:07+01:00
d/control: add myself to uploaders.
- - - - -
321a813c by Étienne Mollier at 2024-03-13T22:10:26+01:00
fix-declaration.patch: new: fix missing declarations.
Closes: #1066633
- - - - -
fc33e654 by Étienne Mollier at 2024-03-13T22:12:12+01:00
typo.patch: new: fix a typo caught by lintian.
- - - - -
03cc97e4 by Étienne Mollier at 2024-03-13T22:12:52+01:00
d/watch: watch file version 4.
- - - - -
a08513e6 by Étienne Mollier at 2024-03-13T22:13:27+01:00
d/control: standards version 4.6.2.
- - - - -
7ae04097 by Étienne Mollier at 2024-03-13T22:13:46+01:00
d/control: debhelper-compat 13.
- - - - -
8b9c95e1 by Étienne Mollier at 2024-03-13T22:15:13+01:00
ready to upload to unstable.
- - - - -
6 changed files:
- debian/changelog
- debian/control
- + debian/patches/fix-declaration.patch
- debian/patches/series
- + debian/patches/typo.patch
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,14 @@
+poa (2.0+20060928-9) unstable; urgency=medium
+
+ * d/control: add myself to uploaders.
+ * fix-declaration.patch: new: fix missing declarations. (Closes: #1066633)
+ * typo.patch: new: fix a typo caught by lintian.
+ * d/watch: watch file version 4.
+ * d/control: standards version 4.6.2.
+ * d/control: debhelper-compat 13.
+
+ -- Étienne Mollier <emollier at debian.org> Wed, 13 Mar 2024 22:14:49 +0100
+
poa (2.0+20060928-8) unstable; urgency=medium
* Team upload.
=====================================
debian/control
=====================================
@@ -1,11 +1,12 @@
Source: poa
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy at debian.org>,
- Andreas Tille <tille at debian.org>
+ Andreas Tille <tille at debian.org>,
+ Étienne Mollier <emollier at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper-compat (= 12)
-Standards-Version: 4.5.0
+Build-Depends: debhelper-compat (= 13)
+Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/poa
Vcs-Git: https://salsa.debian.org/med-team/poa.git
Homepage: http://poamsa.sourceforge.net/
=====================================
debian/patches/fix-declaration.patch
=====================================
@@ -0,0 +1,42 @@
+Description: fix missing function declarations.
+Author: Étienne Mollier <emollier at debian.org>
+Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1066633
+Forwarded: no
+Last-Update: 2024-03-13
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- poa.orig/default.h
++++ poa/default.h
+@@ -112,6 +112,7 @@
+ #define STRINGPTR_BUFFER_CHUNK 4096
+ #define STRINGPTR_EMPTY_INIT {NULL,0}
+
++char *stringptr_cat_pos(stringptr *s1,const char s2[],int *pos);
+ char *stringptr_cat(stringptr *s1,const char s2[]);
+ char *stringptr_cpy(stringptr *s1,const char s2[]);
+ int stringptr_free(stringptr *s);
+--- poa.orig/lpo.h
++++ poa/lpo.h
+@@ -54,6 +54,11 @@
+
+ void free_lpo_sequence(LPOSequence_T *seq,int please_free_holder);
+
++void fuse_ring_identities(int len_x,LPOLetter_T seq_x[],
++ int len_y,LPOLetter_T seq_y[],
++ LPOLetterRef_T al_x[],
++ LPOLetterRef_T al_y[]);
++
+ int add_path_sequence(int path_length,
+ LPOLetterRef_T path[],
+ LPOSequence_T *seq,
+--- poa.orig/msa_format.h
++++ poa/msa_format.h
+@@ -25,6 +25,8 @@
+ msa_file_format;
+
+
++void build_seq_to_po_index(LPOSequence_T *seq);
++
+ /** Reads an MSA from a file (cf. read_msa_select).
+ */
+ LPOSequence_T *read_msa (FILE *ifile, msa_file_format format,
=====================================
debian/patches/series
=====================================
@@ -1,2 +1,4 @@
gcc10.patch
hardening.patch
+fix-declaration.patch
+typo.patch
=====================================
debian/patches/typo.patch
=====================================
@@ -0,0 +1,17 @@
+Description: fix a typo caught by lintian.
+Author: Étienne Mollier <emollier at debian.org>
+Forwarded: no
+Last-Update: 2024-03-13
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- poa.orig/heaviest_bundle.c
++++ poa/heaviest_bundle.c
+@@ -165,7 +165,7 @@
+
+ if (count<1) {
+ premature_warning:
+- fprintf(stderr,"*** WARNING: bundling ended prematurely after %d bundles.\nNo sequences fit inside this last bundle.\nA total of %d sequences incuding consensus were bundled.\n\n",ibundle,nbundled);
++ fprintf(stderr,"*** WARNING: bundling ended prematurely after %d bundles.\nNo sequences fit inside this last bundle.\nA total of %d sequences including consensus were bundled.\n\n",ibundle,nbundled);
+ break;
+ }
+ }
=====================================
debian/watch
=====================================
@@ -1,3 +1,3 @@
-version=3
+version=4
opts="uversionmangle=s/$/.0/,dversionmangle=s/\+.*$//" \
http://sf.net/poamsa/ poaV(.*)\.tar\.gz
View it on GitLab: https://salsa.debian.org/med-team/poa/-/compare/a7a466c506133f9aedd88e990b2cf685c54dd1c7...8b9c95e1889857c1b1a13141a5530740caa6294b
--
View it on GitLab: https://salsa.debian.org/med-team/poa/-/compare/a7a466c506133f9aedd88e990b2cf685c54dd1c7...8b9c95e1889857c1b1a13141a5530740caa6294b
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