[med-svn] [Git][med-team/dialign-t][master] 3 commits: fix-declarations.patch: new: fix build failures.

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / dialign-t


Commits:
642d951c by Étienne Mollier at 2024-03-16T16:06:00+01:00
fix-declarations.patch: new: fix build failures.

Closes: #1066559

- - - - -
c208236d by Étienne Mollier at 2024-03-16T15:06:43+00:00
Update standards version to 4.6.2, no changes needed.

Changes-By: lintian-brush
Fixes: lintian: out-of-date-standards-version
See-also: https://lintian.debian.org/tags/out-of-date-standards-version.html

- - - - -
97ea7499 by Étienne Mollier at 2024-03-16T16:12:17+01:00
ready to upload to unstable.

- - - - -


4 changed files:

- debian/changelog
- debian/control
- + debian/patches/fix-declarations.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+dialign-t (1.0.2-15) unstable; urgency=medium
+
+  * Team upload.
+  * fix-declarations.patch: new: fix build failures. (Closes: #1066559)
+  * Update standards version to 4.6.2, no changes needed.
+
+ -- Étienne Mollier <emollier at debian.org>  Sat, 16 Mar 2024 16:11:18 +0100
+
 dialign-t (1.0.2-14) unstable; urgency=medium
 
   * d/watch: Use http instead of https


=====================================
debian/control
=====================================
@@ -5,7 +5,7 @@ Uploaders: Charles Plessy <plessy at debian.org>,
 Section: science
 Priority: optional
 Build-Depends: debhelper-compat (= 13)
-Standards-Version: 4.6.0
+Standards-Version: 4.6.2
 Vcs-Browser: https://salsa.debian.org/med-team/dialign-t
 Vcs-Git: https://salsa.debian.org/med-team/dialign-t.git
 Homepage: https://dialign-tx.gobics.de/


=====================================
debian/patches/fix-declarations.patch
=====================================
@@ -0,0 +1,25 @@
+Description: fix missing C function declarations.
+Author: Étienne Mollier <emollier at debian.org>
+Bug-Debian: https://bugs.debian.org/1066559
+Forwarded: no
+Last-Update: 2024-03-16
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- dialign-t.orig/source/museq.c
++++ dialign-t/source/museq.c
+@@ -38,6 +38,7 @@
+ //extern void calc_weight(struct diag* dg, struct scr_matrix* smatrix, 
+ //		 struct prob_dist *pdist);
+ //extern struct diag_col *create_diag_col(int seq_amount);
++extern void free_diag(struct diag* dg);
+ extern void free_diag_col(struct diag_col* dcol);
+ extern struct diag_col *find_all_diags(struct scr_matrix *smatrix, 
+ 				struct prob_dist *pdist, 
+@@ -67,6 +68,7 @@
+                                  struct scr_matrix* smatrix,
+                                  struct prob_dist *pdist, struct gt_node *gtn,
+ 					int round);
++extern void free_alignment(struct alignment *algn);
+ 
+ 
+ /**


=====================================
debian/patches/series
=====================================
@@ -5,3 +5,4 @@ clang-ftbfs.diff
 spelling.patch
 mayhem.patch
 gcc10.patch
+fix-declarations.patch



View it on GitLab: https://salsa.debian.org/med-team/dialign-t/-/compare/31be8a8417a597ead412e30ea9fc411dcb66813a...97ea7499da390f3fcf749f365ea27a4a1110060b

-- 
View it on GitLab: https://salsa.debian.org/med-team/dialign-t/-/compare/31be8a8417a597ead412e30ea9fc411dcb66813a...97ea7499da390f3fcf749f365ea27a4a1110060b
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