[med-svn] [Git][med-team/lagan][master] 2 commits: Add patch to fix FTBFS with implicit-function-declaration (Closes: #1066580)

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / lagan


Commits:
8d2e6942 by Nilesh Patra at 2024-03-25T12:32:22+05:30
Add patch to fix FTBFS with implicit-function-declaration (Closes: #1066580)

- - - - -
72adfc24 by Nilesh Patra at 2024-03-25T12:32:47+05:30
Upload to unstable

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/fixup-implicit-function-declaration.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+lagan (2.0-10) unstable; urgency=medium
+
+  * Team Upload.
+  * Add patch to fix FTBFS with
+    implicit-function-declaration (Closes: #1066580)
+
+ -- Nilesh Patra <nilesh at iki.fi>  Mon, 25 Mar 2024 12:32:30 +0530
+
 lagan (2.0-9) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/patches/fixup-implicit-function-declaration.patch
=====================================
@@ -0,0 +1,63 @@
+--- a/src/utils/cstat.c
++++ b/src/utils/cstat.c
+@@ -3,6 +3,7 @@
+ #include <string.h>
+ #include <math.h>
+ #include <assert.h>
++#include <ctype.h>
+ 
+ #define MAX_SEQ 31
+ #define MAX(a,b) ((a)>(b)?(a):(b))
+--- a/src/order.c
++++ b/src/order.c
+@@ -49,6 +49,8 @@
+ 
+ int substmatrix[256][256];
+ 
++int printXMFAAlign(char*, char*, align*, char*, char*);
++int printMFAAlign(char*, char*, align*, char*, char*);
+ 
+ seq* readfile(FILE* input, int seqnum) {
+   char* res = (char*) malloc(sizeof(char)*2);
+--- a/src/utils/scorecontigs.c
++++ b/src/utils/scorecontigs.c
+@@ -3,6 +3,7 @@
+ #include <string.h>
+ #include <math.h>
+ #include <assert.h>
++#include <ctype.h>
+ 
+ #define MAX_SEQ 1024
+ #define MAX(a,b) ((a)>(b)?(a):(b))
+--- a/src/utils/overlay.c
++++ b/src/utils/overlay.c
+@@ -2,6 +2,7 @@
+ #include <stdio.h>
+ #include <assert.h>
+ #include <string.h>
++#include <ctype.h>
+ 
+ #define MAX_SEQS 63
+ #define MIN2(y,z)        ((y)<(z))?(y):(z)
+--- a/src/mlagan.c
++++ b/src/mlagan.c
+@@ -31,6 +31,8 @@
+ static align *simaligns[MAX_SEQ];
+ static char* lagan_dir;
+ 
++extern int printXMFAAlign(FILE*, align*);
++
+ static int hptrcomp (const void *p1, const void *p2) {
+   int i = ((hptr*)p1)->number;
+   int j = ((hptr*)p2)->number;
+--- a/src/prolagan.c
++++ b/src/prolagan.c
+@@ -34,6 +34,8 @@
+ static align *profile1 = 0;
+ static align *profile2 = 0;
+ 
++extern int printXMFAAlign(FILE*, align*);
++
+ static int hptrcomp (const void *p1, const void *p2) {
+   int i = ((hptr*)p1)->number;
+   int j = ((hptr*)p2)->number;


=====================================
debian/patches/series
=====================================
@@ -8,3 +8,4 @@ cross.patch
 gcc9.patch
 gcc10.patch
 gcc-lto.patch
+fixup-implicit-function-declaration.patch



View it on GitLab: https://salsa.debian.org/med-team/lagan/-/compare/aa800534e626e42bca17b51428def2e4e02dbd7b...72adfc24e992dca8c1e836a2ccb442ec41c06aaa

-- 
View it on GitLab: https://salsa.debian.org/med-team/lagan/-/compare/aa800534e626e42bca17b51428def2e4e02dbd7b...72adfc24e992dca8c1e836a2ccb442ec41c06aaa
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