[med-svn] [Git][med-team/hyphy][upstream] New upstream version 2.5.61+dfsg

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch upstream at Debian Med / hyphy


Commits:
29675773 by Étienne Mollier at 2024-05-08T18:16:39+02:00
New upstream version 2.5.61+dfsg
- - - - -


30 changed files:

- CMakeLists.txt
- res/TemplateBatchFiles/MSS-joint-fitter.bf
- res/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf
- res/TemplateBatchFiles/SelectionAnalyses/FEL.bf
- res/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
- res/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
- res/TemplateBatchFiles/SeqAlignmentCodonShared.ibf
- res/TemplateBatchFiles/libv3/all-terms.bf
- res/TemplateBatchFiles/libv3/models/codon/MG_REV.bf
- res/TemplateBatchFiles/libv3/models/codon/MSS.bf
- res/TemplateBatchFiles/libv3/models/model_functions.bf
- res/TemplateBatchFiles/libv3/models/parameters.bf
- res/TemplateBatchFiles/libv3/tasks/alignments.bf
- res/TemplateBatchFiles/libv3/tasks/estimators.bf
- res/TemplateBatchFiles/libv3/tasks/mpi.bf
- res/TemplateBatchFiles/libv3/tasks/trees.bf
- src/core/alignment.cpp
- src/core/batchlanruntime.cpp
- src/core/formula.cpp
- src/core/fstring.cpp
- src/core/global_things.cpp
- src/core/include/defines.h
- src/core/include/formula.h
- src/core/include/likefunc.h
- src/core/include/matrix.h
- src/core/include/topology.h
- src/core/include/variable.h
- src/core/likefunc.cpp
- src/core/matrix.cpp
- src/core/topology.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/commit/2967577397961d4767c7c9b762d4555133ef94e4

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View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/commit/2967577397961d4767c7c9b762d4555133ef94e4
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