[med-svn] [Git][med-team/kaptive][master] 6 commits: d/gbp.conf: enable auxiliary test data.

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / kaptive


Commits:
1fbcc50c by Étienne Mollier at 2024-05-26T19:55:33+02:00
d/gbp.conf: enable auxiliary test data.

- - - - -
c8da9c70 by Étienne Mollier at 2024-05-26T19:56:25+02:00
New upstream version 3.0.0
- - - - -
4d07307a by Étienne Mollier at 2024-05-26T19:57:43+02:00
Update upstream source from tag 'upstream/3.0.0'

Update to upstream version '3.0.0'
with Debian dir 609ef9dd0bb70a461e8315b315b2587be048fae3
- - - - -
45061949 by Étienne Mollier at 2024-05-26T19:59:17+02:00
d/kaptive-example.install: adjust to inclusion of debian-test-data.

- - - - -
abfb9940 by Étienne Mollier at 2024-05-26T20:25:07+02:00
d/control: kaptive depends on minimap2.

- - - - -
35141fa9 by Étienne Mollier at 2024-05-26T20:25:53+02:00
update changelog, with new package to include.

- - - - -


8 changed files:

- + debian-tests-data/exact_match.fasta
- + debian-tests-data/fragmented_assembly.fasta
- + debian-tests-data/inexact_match.fasta
- + debian-tests-data/very_poor_match.fasta
- debian/changelog
- debian/control
- + debian/gbp.conf
- debian/kaptive-example.install


Changes:

=====================================
debian-tests-data/exact_match.fasta
=====================================
The diff for this file was not included because it is too large.

=====================================
debian-tests-data/fragmented_assembly.fasta
=====================================
The diff for this file was not included because it is too large.

=====================================
debian-tests-data/inexact_match.fasta
=====================================
The diff for this file was not included because it is too large.

=====================================
debian-tests-data/very_poor_match.fasta
=====================================
The diff for this file was not included because it is too large.

=====================================
debian/changelog
=====================================
@@ -1,14 +1,19 @@
 kaptive (3.0.0-1) UNRELEASED; urgency=medium
 
   * d/watch: make beta versions older than releases.
+  * d/gbp.conf: enable auxiliary test data.
   * New upstream version 3.0.0
   * d/copyright: refresh contributors and years.
   * Delete all patches: none applied anymore.
   * d/control: declare compliance to standards version 4.7.0.
   * d/{control,copyright,watch}: update to new source location.
- TODO: redo test infrastructure anew; sample data has been removed upstream.
+  * d/kaptive-example.install: adjust to inclusion of debian-test-data.
+  * d/control: kaptive depends on minimap2.
+ TODO: package DnaFeaturesViewer[1,2]
+ [1]: https://edinburgh-genome-foundry.github.io/DnaFeaturesViewer/
+ [2]: https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer
 
- -- Étienne Mollier <emollier at debian.org>  Sun, 26 May 2024 19:33:59 +0200
+ -- Étienne Mollier <emollier at debian.org>  Sun, 26 May 2024 20:23:33 +0200
 
 kaptive (2.0.8-1) unstable; urgency=medium
 


=====================================
debian/control
=====================================
@@ -21,7 +21,8 @@ Architecture: all
 Depends: ${python3:Depends},
          ${misc:Depends},
          python3-biopython,
-         ncbi-blast+
+         ncbi-blast+,
+         minimap2
 Suggests: kaptive-data,
           kaptive-example
 Description: obtain information about K and O types for Klebsiella genome assemblies


=====================================
debian/gbp.conf
=====================================
@@ -0,0 +1,2 @@
+[DEFAULT]
+component=['debian-tests-data']


=====================================
debian/kaptive-example.install
=====================================
@@ -1 +1 @@
-sample_data/*	usr/share/doc/kaptive/examples
+debian-tests-data/*	usr/share/doc/kaptive/examples



View it on GitLab: https://salsa.debian.org/med-team/kaptive/-/compare/9b71ea4ab92ae5a5329c2ec21a0d7acebbf478f3...35141fa985d4a91f84317140d04d5eabd461861b

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