[med-svn] [Git][med-team/augur][master] 5 commits: New upstream version 26.0.0

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / augur


Commits:
51f06ee0 by Étienne Mollier at 2024-11-02T14:29:38+01:00
New upstream version 26.0.0
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eae621a4 by Étienne Mollier at 2024-11-02T14:29:56+01:00
Update upstream source from tag 'upstream/26.0.0'

Update to upstream version '26.0.0'
with Debian dir 5264bafe3eca653214f023d5c04e119a65add5ca
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f2aa8a92 by Étienne Mollier at 2024-11-02T14:35:35+01:00
d/p/*.patch: unfuzz patches.

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134eeb79 by Étienne Mollier at 2024-11-02T14:48:44+01:00
disable-coverage.patch: new: do not run test coverage measurement.

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57662b21 by Étienne Mollier at 2024-11-02T14:53:39+01:00
d/changelog: update and introduce TODO item.

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30 changed files:

- .github/pull_request_template.md
- .github/workflows/ci.yaml
- .gitignore
- .mailmap
- CHANGES.md
- DEPRECATED.md
- README.md
- augur/__init__.py
- augur/__main__.py
- augur/__version__.py
- augur/argparse_.py
- augur/curate/__init__.py
- + augur/curate/abbreviate_authors.py
- + augur/curate/apply_geolocation_rules.py
- + augur/curate/apply_record_annotations.py
- augur/curate/format_dates.py
- + augur/curate/parse_genbank_location.py
- + augur/curate/rename.py
- augur/curate/titlecase.py
- + augur/curate/transform_strain_name.py
- augur/data/colors.tsv
- augur/dates/__init__.py
- + augur/debug.py
- augur/export_v2.py
- − augur/filenames.py
- augur/filter/__init__.py
- augur/filter/_run.py
- augur/filter/include_exclude_rules.py
- augur/filter/io.py
- augur/filter/subsample.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/augur/-/compare/da0cfadba328613dd2c103fc6f0585d26056e312...57662b21e05ec845395d4da60a9974b677afb172

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View it on GitLab: https://salsa.debian.org/med-team/augur/-/compare/da0cfadba328613dd2c103fc6f0585d26056e312...57662b21e05ec845395d4da60a9974b677afb172
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