[med-svn] [Git][med-team/gmap][master] 7 commits: New upstream version 2024-10-20+ds

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / gmap


Commits:
9b84fa74 by Étienne Mollier at 2024-11-03T17:25:18+01:00
New upstream version 2024-10-20+ds
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77005819 by Étienne Mollier at 2024-11-03T17:25:25+01:00
Update upstream source from tag 'upstream/2024-10-20+ds'

Update to upstream version '2024-10-20+ds'
with Debian dir 359906eb8bcd2f7fd38cfc630b3d5a35ec20115e
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2e6bb2eb by Étienne Mollier at 2024-11-03T17:28:12+01:00
remove_getopt_code_copy.patch: unfuzz.

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60afede7 by Étienne Mollier at 2024-11-03T17:41:03+01:00
d/s/local-options: remove: avoid various latent interferences.

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6b9fa8d0 by Étienne Mollier at 2024-11-03T17:55:37+01:00
remove_getopt_code_copy.patch: normalize date.

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4ef91833 by Étienne Mollier at 2024-11-03T17:57:03+01:00
d/patches/install-data-local: identified authorship.

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4aabd10d by Étienne Mollier at 2024-11-03T18:09:07+01:00
d/changelog: ready for upload to unstable.

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30 changed files:

- ChangeLog
- VERSION
- debian/changelog
- debian/patches/install-data-local
- debian/patches/remove_getopt_code_copy.patch
- − debian/source/local-options
- src/Makefile.am
- src/altsplice.c
- src/concordance.c
- src/extension-search.c
- src/extension-search.h
- src/genomebits_count.c
- src/gmap.c
- src/gsnap.c
- src/indel.c
- src/intersect-small.c
- src/kmer-search.c
- src/localdb-read.c
- src/localdb-read.h
- src/mem.c
- src/mem.h
- + src/merge-diagonals-heap-uint4.c
- + src/merge-diagonals-heap-uint4.h
- src/merge-diagonals-heap.c → src/merge-diagonals-heap-uint8.c
- src/merge-diagonals-heap.h → src/merge-diagonals-heap-uint8.h
- src/merge-diagonals-simd-uint4.c
- src/merge-diagonals-simd-uint4.h
- src/merge-diagonals-simd-uint8.c
- src/merge-diagonals-simd-uint8.h
- + src/merge-method.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/gmap/-/compare/7ec8875433241eb48cae08e8210554271c41dd92...4aabd10df1114a25c0259588076a2456fcd81662

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View it on GitLab: https://salsa.debian.org/med-team/gmap/-/compare/7ec8875433241eb48cae08e8210554271c41dd92...4aabd10df1114a25c0259588076a2456fcd81662
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