[med-svn] [Git][med-team/cnvkit][master] 5 commits: New upstream version

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / cnvkit


Commits:
e8336e7d by Michael R. Crusoe at 2024-11-15T10:53:35+01:00
New upstream version

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fe807ead by Michael R. Crusoe at 2024-11-15T10:53:36+01:00
New upstream version 0.9.11
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3b4d01ee by Michael R. Crusoe at 2024-11-15T10:55:22+01:00
Update upstream source from tag 'upstream/0.9.11'

Update to upstream version '0.9.11'
with Debian dir 48c737c3df15026d0ea54fbaa3a68f8ef8cf78f6
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b451570a by Michael R. Crusoe at 2024-11-15T10:55:23+01:00
Standards-Version: 4.7.0 (routine-update)

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30f9ef20 by Michael R. Crusoe at 2024-11-15T11:00:27+01:00
Removed spelling patch, it was applied upstream. Remaining patches were refreshed.

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30 changed files:

- .github/workflows/tests-tox.yaml
- .readthedocs.yaml
- docker/Dockerfile → Dockerfile
- README.rst
- cnvlib/__init__.py
- cnvlib/_version.py
- cnvlib/batch.py
- cnvlib/call.py
- cnvlib/cmdutil.py
- cnvlib/cnary.py
- cnvlib/commands.py
- cnvlib/core.py
- cnvlib/coverage.py
- cnvlib/export.py
- cnvlib/fix.py
- cnvlib/import_rna.py
- cnvlib/params.py
- cnvlib/reference.py
- cnvlib/reports.py
- cnvlib/rna.py
- cnvlib/segfilters.py
- cnvlib/segmentation/__init__.py
- cnvlib/segmentation/hmm.py
- cnvlib/vary.py
- + conda-env.yml
- + data/access-10kb.hg38.bed
- + data/refFlat_hg38.txt
- debian/changelog
- debian/control
- debian/patches/controldir


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/cnvkit/-/compare/7fde81e7e2b31632b038d96ff31cb481bee50258...30f9ef2080fb419609a747eaa125cdbc338692ad

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View it on GitLab: https://salsa.debian.org/med-team/cnvkit/-/compare/7fde81e7e2b31632b038d96ff31cb481bee50258...30f9ef2080fb419609a747eaa125cdbc338692ad
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