[med-svn] [Git][med-team/gubbins][master] 6 commits: New upstream version 3.4

Étienne Mollier (@emollier) gitlab at salsa.debian.org
Sat Nov 30 18:00:55 GMT 2024


Étienne Mollier pushed to branch master at Debian Med / gubbins


Commits:
8ed57cf9 by Étienne Mollier at 2024-11-30T18:36:38+01:00
New upstream version 3.4
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cbd588e7 by Étienne Mollier at 2024-11-30T18:36:49+01:00
Update upstream source from tag 'upstream/3.4'

Update to upstream version '3.4'
with Debian dir d153bfc6d870f71689114e396162e5abce1d2fb8
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402305b3 by Étienne Mollier at 2024-11-30T18:44:05+01:00
d/copyright: document missing copyright owners.

Those are Wellcome Trust Sanger Institute and Imperial College London.

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7a1a6464 by Étienne Mollier at 2024-11-30T18:57:00+01:00
d/control: declare compliance to standards version 4.7.0.

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65b09687 by Étienne Mollier at 2024-11-30T18:58:49+01:00
d/patches/*: normalise last-update timestamp to dep3.

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ed2d2ea4 by Étienne Mollier at 2024-11-30T19:00:31+01:00
d/changelog: ready for upload to unstable.

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30 changed files:

- .github/workflows/build.yml
- R/scripts/plot_gubbins.R
- README.md
- VERSION
- configure.ac
- debian/changelog
- debian/control
- debian/copyright
- debian/patches/autoupdate_configure.ac.patch
- debian/patches/do_not_handle_python_by_upstream_build_system.patch
- debian/patches/gubbins_exe_in_usr_lib.patch
- debian/patches/iqtree2.patch
- docs/gubbins_manual.md
- python/gubbins/common.py
- python/gubbins/tests/test_python_scripts.py
- python/gubbins/tests/test_utils.py
- python/gubbins/treebuilders.py
- python/gubbins/utils.py
- + python/scripts/extract_recombinant_sequences.py
- python/scripts/generate_ska_alignment.py
- python/setup.py
- src/Newickform.c
- src/Newickform.h
- src/block_tab_file.c
- src/branch_sequences.c
- src/branch_sequences.h
- src/csv_of_snp_sites.c
- src/gubbins.c
- src/gubbins.h
- src/main.c


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/gubbins/-/compare/84c753717101b71a990a4ee96100543f720a749f...ed2d2ea4d007e24f13e667ea8b0b404499bddc95

-- 
View it on GitLab: https://salsa.debian.org/med-team/gubbins/-/compare/84c753717101b71a990a4ee96100543f720a749f...ed2d2ea4d007e24f13e667ea8b0b404499bddc95
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