[med-svn] [Git][med-team/snakemake][debian-v7] Stop using pkg_resources. (Closes: #1083775)

[Rebecca N. Palmer (@rnpalmer-guest)]

Rebecca N. Palmer pushed to branch debian-v7 at Debian Med / snakemake


Commits:
95c52c07 by Rebecca N. Palmer at 2024-10-04T19:09:25+01:00
Stop using pkg_resources. (Closes: #1083775)

- - - - -


4 changed files:

- debian/changelog
- debian/control
- + debian/patches/no_pkg_resources.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+snakemake (7.32.4-6) unstable; urgency=medium
+
+  * Stop using pkg_resources. (Closes: #1083775)
+
+ -- Rebecca N. Palmer <rebecca_palmer at zoho.com>  Fri, 04 Oct 2024 19:09:12 +0100
+
 snakemake (7.32.4-5) unstable; urgency=medium
 
   * Tests: revert extra debug output.


=====================================
debian/control
=====================================
@@ -28,7 +28,6 @@ Build-Depends: ca-certificates,
                python3-nbformat,
                python3-packaging,
                python3-pandas <!nocheck>,
-               python3-pkg-resources,
                python3-psutil,
                python3-pulp (>= 2.0~),
                python3-pygments <!nocheck>,
@@ -74,7 +73,7 @@ Depends: ${misc:Depends},
          python3-git,
          python3-jsonschema,
          python3-nbformat,
-         python3-pkg-resources,
+         python3-packaging,
          python3-psutil,
          python3-pulp (>= 2.0~),
          python3-ratelimiter,
@@ -103,7 +102,6 @@ Recommends: cwltool,
             python3-ftputil,
             python3-irodsclient,
             python3-kubernetes,
-            python3-packaging,
             python3-retry,
             python3-urllib3
 Suggests: slurm-client,


=====================================
debian/patches/no_pkg_resources.patch
=====================================
@@ -0,0 +1,20 @@
+Description: Stop using pkg_resources
+
+Author: Rebecca N. Palmer <rebecca_palmer at zoho.com>
+Bug-Debian: https://bugs.debian.org/1083775
+Forwarded: no
+
+--- a/snakemake/utils.py
++++ b/snakemake/utils.py
+@@ -466,9 +466,9 @@ def read_job_properties(
+ 
+ def min_version(version):
+     """Require minimum snakemake version, raise workflow error if not met."""
+-    import pkg_resources
++    import packaging
+ 
+-    if pkg_resources.parse_version(snakemake.__version__) < pkg_resources.parse_version(
++    if packaging.version.parse(snakemake.__version__) < packaging.version.parse(
+         version
+     ):
+         raise WorkflowError(


=====================================
debian/patches/series
=====================================
@@ -20,3 +20,4 @@ fstring.patch
 1068010_appdirs_to_platformdirs.patch
 test_solver.patch
 test_extra_time.patch
+no_pkg_resources.patch



View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/commit/95c52c0780451a7daf9b08a45db22d95b73c0fbd

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View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/commit/95c52c0780451a7daf9b08a45db22d95b73c0fbd
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