[med-svn] [Git][med-team/macs][master] 5 commits: routine-update: New upstream version

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / macs


Commits:
09a99552 by Michael R. Crusoe at 2024-09-07T22:32:45+02:00
routine-update: New upstream version

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74e9595f by Michael R. Crusoe at 2024-09-07T22:32:48+02:00
New upstream version 3.0.2
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12fc02d9 by Michael R. Crusoe at 2024-09-07T22:41:55+02:00
Update upstream source from tag 'upstream/3.0.2'

Update to upstream version '3.0.2'
with Debian dir 98f220e86bbb4819f51eb9a638fd6d3ff23f4588
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bbddbd4e by Michael R. Crusoe at 2024-09-08T01:07:39+02:00
Dropped 4 patches applied upstream; refreshed the rest

python3, spelling, invalid_escape_sequence, adapt_to_prelease_hmmlearn

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730fd174 by Michael R. Crusoe at 2024-09-08T01:09:37+02:00
routine-update: Ready to upload to unstable

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30 changed files:

- .github/workflows/build-and-test-MACS3-macos.yml
- .github/workflows/build-and-test-MACS3-non-x64-others.yml
- .github/workflows/build-and-test-MACS3-non-x64.yml
- .github/workflows/build-and-test-MACS3-x64.yml
- .github/workflows/publish-to-gh-with-sphinx.yml
- .github/workflows/publish-to-pypi.yml
- ChangeLog
- MACS3/Commands/bdgbroadcall_cmd.py
- MACS3/Commands/bdgcmp_cmd.py
- MACS3/Commands/bdgdiff_cmd.py
- MACS3/Commands/bdgopt_cmd.py
- MACS3/Commands/bdgpeakcall_cmd.py
- MACS3/Commands/callvar_cmd.py
- MACS3/Commands/cmbreps_cmd.py
- MACS3/Commands/hmmratac_cmd.py
- MACS3/IO/BedGraphIO.pyx
- MACS3/IO/PeakIO.pyx
- MACS3/Signal/BedGraph.pyx
- MACS3/Signal/HMMR_HMM.pyx
- MACS3/Signal/HMMR_Signal_Processing.pyx
- MACS3/Signal/PileupV2.pyx
- MACS3/Signal/ScoreTrack.pyx
- MACS3/Signal/SignalProcessing.pyx
- MACS3/Utilities/Constants.py
- MACS3/Utilities/OptValidator.py
- README.md
- bin/macs3
- conda/macs3/meta.yaml
- debian/changelog
- − debian/patches/adapt_to_prelease_hmmlearn.patch


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/macs/-/compare/763fc65c2b4915c0bd981a2d39837c742f9ad137...730fd174f2a805487ec302d12e3abde90ba69722

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View it on GitLab: https://salsa.debian.org/med-team/macs/-/compare/763fc65c2b4915c0bd981a2d39837c742f9ad137...730fd174f2a805487ec302d12e3abde90ba69722
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