[med-svn] [Git][med-team/bbmap][upstream] New upstream version 39.09+dfsg

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch upstream at Debian Med / bbmap


Commits:
6c854f02 by Étienne Mollier at 2024-09-18T23:10:16+02:00
New upstream version 39.09+dfsg
- - - - -


30 changed files:

- README.md
- bloomfilter.sh
- + build.xml
- calcmem.sh
- cg2illumina.sh
- current/align2/AbstractMapper.java
- current/align2/BBMap.java
- current/align2/BBMap5.java
- current/align2/BBMapAcc.java
- current/align2/BBMapPacBio.java
- current/align2/BBMapPacBioSkimmer.java
- current/aligner/MicroAligner.java
- current/assemble/Tadpole.java
- current/barcode/BarcodeStats.java
- current/barcode/CountBarcodes2.java
- current/barcode/DemuxServer.java
- current/barcode/NovaDemux.java
- current/barcode/PCRMatrix.java
- current/barcode/prob/PCRMatrixProb.java → current/barcode/stub/PCRMatrixProb.java
- current/barcode/prob/PCRMatrixProbAbstract.java → current/barcode/stub/PCRMatrixProbAbstract.java
- current/barcode/prob/PCRMatrixTile.java → current/barcode/stub/PCRMatrixTile.java
- current/bloom/BloomFilter.java
- + current/bloom/PolyFilter.java
- current/driver/FilterReadsByName.java
- current/fileIO/FileFormat.java
- current/fileIO/ReadWrite.java
- current/hiseq/AnalyzeFlowCell.java
- current/hiseq/BGIHeaderParser.java
- current/hiseq/BGIHeaderParser2.java
- current/hiseq/FlowCell.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/commit/6c854f027f249268aa4732b950c9e72aa40071a6

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View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/commit/6c854f027f249268aa4732b950c9e72aa40071a6
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