[med-svn] [Git][med-team/drop-seq][master] 6 commits: Refreshing the list of files to remove when repacking

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / drop-seq


Commits:
dfa238cd by Pierre Gruet at 2024-09-29T21:41:11+02:00
Refreshing the list of files to remove when repacking

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fc203848 by Pierre Gruet at 2024-09-29T21:45:09+02:00
New upstream version 3.0.2+dfsg
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ad52d5ee by Pierre Gruet at 2024-09-29T21:47:04+02:00
Update upstream source from tag 'upstream/3.0.2+dfsg'

Update to upstream version '3.0.2+dfsg'
with Debian dir b2f248be4ba49293287ed26f161d2ca5dc7f0fa5
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b669bc4c by Pierre Gruet at 2024-09-29T21:58:05+02:00
Refreshing patches

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25d41b38 by Pierre Gruet at 2024-09-29T21:59:43+02:00
Updating changelog

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9a0df402 by Pierre Gruet at 2024-09-29T23:07:26+02:00
Upload to unstable

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30 changed files:

- README.md
- debian/changelog
- debian/copyright
- debian/patches/link_excluded_file.patch
- debian/patches/openjdk_21_syntax.patch
- debian/patches/paths_in_scripts.patch
- debian/patches/put_defs_sh_out_of_path.patch
- + doc/Donor_Assignment_Computational_Cookbook.pdf
- dropseq/build.gradle.kts
- − gradle/wrapper/gradle-wrapper.jar
- − gradle/wrapper/gradle-wrapper.properties
- src/R/packages/DropSeq.dropulation/DESCRIPTION
- src/R/packages/DropSeq.dropulation/NAMESPACE
- src/R/packages/DropSeq.dropulation/R/DonorAssignmentStandardAnalysis.R
- src/R/packages/DropSeq.dropulation/README.md
- src/R/packages/DropSeq.utilities/DESCRIPTION
- src/build/make_wrapper_scripts.sh
- src/build/public_clp_template.sh
- src/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpression.java
- src/java/org/broadinstitute/dropseqrna/barnyard/GatherMolecularBarcodeDistributionByGene.java
- src/java/org/broadinstitute/dropseqrna/barnyard/MarkChimericReads.java
- src/java/org/broadinstitute/dropseqrna/barnyard/SelectCellsByNumTranscripts.java
- src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/FilterReadsByUMISupport.java
- src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GatherDigitalAlleleCounts.java
- src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileupIterator.java
- src/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/UMICollection.java
- src/java/org/broadinstitute/dropseqrna/beadsynthesis/BiasedBarcodeCollectionFactory.java
- src/java/org/broadinstitute/dropseqrna/beadsynthesis/CorrectAndSplitScrnaReadPairs.java
- src/java/org/broadinstitute/dropseqrna/beadsynthesis/DetectBeadSynthesisErrors.java
- src/java/org/broadinstitute/dropseqrna/eqtl/CreateMetaCells.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/551ad6d9b69a3deb3f182479d6c48d0325595b45...9a0df4025fb81e5d3b3ae0e17e79711359e276c5

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View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/551ad6d9b69a3deb3f182479d6c48d0325595b45...9a0df4025fb81e5d3b3ae0e17e79711359e276c5
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