[med-svn] [Git][med-team/sepp][upstream] New upstream version 4.5.5+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch upstream at Debian Med / sepp


Commits:
5d1e37b4 by Pierre Gruet at 2024-09-30T20:19:08+02:00
New upstream version 4.5.5+dfsg
- - - - -


4 changed files:

- CHANGELOG.md
- sepp/__init__.py
- sepp/tree.py
- setup.py


Changes:

=====================================
CHANGELOG.md
=====================================
@@ -1,3 +1,5 @@
+* Version 4.5.5:
+  * Keep backwards compatible with dendropy < 4.5.2
 * Version 4.5.4:
   * Slight improvements in logging key information
 * Version 4.5.3:


=====================================
sepp/__init__.py
=====================================
@@ -27,7 +27,7 @@ __all__ = ['algorithm', 'alignment', 'backtranslate',
            'jobs', 'math_utils', 'problem', 'scheduler',
            'scratch', 'tree', 'get_logger', 'is_temp_kept', 'version']
 
-version = "4.5.4"
+version = "4.5.5"
 _DEBUG = ("SEPP_DEBUG" in os.environ) and \
     (os.environ["SEPP_DEBUG"].lower() == "true")
 


=====================================
sepp/tree.py
=====================================
@@ -256,7 +256,12 @@ for l2 in sys.stdin.readlines():
 
         nr.edge.length = None
         nr.parent_node = None
-        nr._convert_node_to_root_polytomy()
+        try:
+            nr._convert_node_to_root_polytomy()
+        except AttributeError:
+            from dendropy.datamodel.treemodel import \
+                _convert_node_to_root_polytomy
+            _convert_node_to_root_polytomy(nr)
         t1 = PhylogeneticTree(Tree(seed_node=nr))
         # temp we could speed this up,
         # by telling the Phylogenetic tree how many leaves it has


=====================================
setup.py
=====================================
@@ -29,7 +29,7 @@ from setuptools import find_packages
 from distutils.core import setup, Command
 
 use_setuptools(version="0.6.24")
-version = "4.5.4"
+version = "4.5.5"
 
 
 def get_tools_dir(where):



View it on GitLab: https://salsa.debian.org/med-team/sepp/-/commit/5d1e37b47c145abcc55a1b1c30bdb1736a4be435

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View it on GitLab: https://salsa.debian.org/med-team/sepp/-/commit/5d1e37b47c145abcc55a1b1c30bdb1736a4be435
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