[med-svn] [Git][med-team/ncbi-entrez-direct][upstream] 22 commits: New upstream version 19.3.20230411+dfsg

Thu Apr 10 04:28:06 BST 2025

Aaron M. Ucko pushed to branch upstream at Debian Med / ncbi-entrez-direct

Commits:
e923eab8 by Aaron M. Ucko at 2024-04-21T13:19:17-04:00
New upstream version 19.3.20230411+dfsg
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126c373f by Aaron M. Ucko at 2024-04-21T13:41:38-04:00
New upstream version 19.3.20230421+dfsg
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9d7c5234 by Aaron M. Ucko at 2024-04-21T14:19:59-04:00
New upstream version 19.4.20230424+dfsg
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281ddeae by Aaron M. Ucko at 2024-04-21T15:20:00-04:00
New upstream version 19.4.20230503+dfsg
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a4c168ae by Aaron M. Ucko at 2024-04-21T17:54:29-04:00
New upstream version 19.5.20230508+dfsg
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29102eee by Aaron M. Ucko at 2024-04-21T17:59:16-04:00
New upstream version 19.6.20230524+dfsg
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b14f7f82 by Aaron M. Ucko at 2024-04-21T18:04:09-04:00
New upstream version 19.6.20230525+dfsg
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7563ce30 by Aaron M. Ucko at 2024-04-21T18:06:15-04:00
New upstream version 19.7.20230531+dfsg
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ee46c534 by Aaron M. Ucko at 2024-04-21T19:43:43-04:00
New upstream version 19.7.20230602+dfsg
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2b07b0b7 by Aaron M. Ucko at 2024-04-21T19:46:40-04:00
New upstream version 19.8.20230608+dfsg
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4a812db6 by Aaron M. Ucko at 2024-04-21T19:54:24-04:00
New upstream version 19.8.20230628+dfsg
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2a41161a by Aaron M. Ucko at 2024-04-21T21:06:29-04:00
New upstream version 19.9.20230629+dfsg
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37c2521f by Aaron M. Ucko at 2024-04-21T21:07:21-04:00
New upstream version 19.9.20230706+dfsg
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00aa4c0c by Aaron M. Ucko at 2024-04-21T21:09:10-04:00
New upstream version 20.0.20230716+dfsg
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3f36eca6 by Aaron M. Ucko at 2024-04-21T21:14:12-04:00
New upstream version 20.0.20230724+dfsg
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3bca75e0 by Aaron M. Ucko at 2024-04-21T21:15:35-04:00
New upstream version 20.1.20230731+dfsg
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6120e228 by Aaron M. Ucko at 2024-04-21T21:18:50-04:00
New upstream version 20.2.20230822+dfsg
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3ed30732 by Aaron M. Ucko at 2024-04-22T15:08:59-04:00
New upstream version 20.3.20230829+dfsg
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760893ee by Aaron M. Ucko at 2024-04-22T15:12:05-04:00
New upstream version 20.3.20230908+dfsg
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d23b8bdd by Aaron M. Ucko at 2024-04-22T15:20:07-04:00
New upstream version 20.4.20230911+dfsg
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e5ce7471 by Aaron M. Ucko at 2025-04-02T20:59:49-04:00
New upstream version 23.7.20250401+dfsg
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cf0775c2 by Aaron M. Ucko at 2025-04-08T22:09:12-04:00
New upstream version 23.8.20250408+dfsg
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168 changed files:

- + LICENSE
- README
- align-columns
- + archive-nihocc
- + archive-nlmnlp
- + archive-nmcds
- + archive-pids
- archive-pmc
- archive-pubmed
- + archive-taxonomy
- + args2slice
- + bsmp2info
- cit2pmid
- cmd/build.sh
- cmd/edict.go
- cmd/go.mod
- cmd/go.sum
- cmd/rchive.go
- cmd/transmute.go
- cmd/xtract.go
- custom-index
- + data/unicode-ascii.txt
- help/unicode-extras.txt → data/unicode-extra.txt
- disambiguate-nucleotides
- + download-flatfile
- download-ncbi-data
- download-ncbi-software
- download-pmc
- download-pubmed
- download-sequence
- + ecollect
- ecommon.sh
- edirect.py
- efetch
- efilter
- einfo
- elink
- epost
- esample
- esearch
- esummary
- eutils/align.go
- eutils/asn.go
- eutils/cache.go
- eutils/chan.go
- eutils/citref.go
- eutils/clean.go
- + eutils/eutils_test.go
- eutils/fasta.go
- eutils/format.go
- eutils/gbff.go
- eutils/gcode.go
- eutils/gdata.go
- eutils/go.mod
- eutils/go.sum
- eutils/hgvs.go
- eutils/index.go
- + eutils/ini.go
- + eutils/insd.go
- eutils/json.go
- eutils/merge.go
- eutils/misc.go
- eutils/molwt.go
- eutils/normal.go
- eutils/phrase.go
- eutils/poster.go
- eutils/search.go
- eutils/spdi.go
- eutils/table.go
- + eutils/text.go
- + eutils/toml.go
- + eutils/transmute_test.go
- eutils/trie.go
- eutils/utils.go
- eutils/valid.go
- eutils/xml.go
- + eutils/xparse.go
- eutils/xplore.go
- + eutils/xtract_test.go
- + eutils/yaml.go
- expand-current
- + extern/build.sh
- + extern/prep-finish.go
- + extern/prep-geneinfo.go
- + extern/prep-generif.go
- + extern/prep-nihocc.go
- + extern/prep-nlmnlp.go
- + extern/prep-taxoninfo.go
- − fetch-pmc
- − fetch-pubmed
- filter-columns
- index-pubmed → filter-genbank
- + filter-record
- + fsa2xml
- fuse-segments
- + gbf2facds
- + gbf2fsa
- + gbf2info
- + gff-sort
- + gff2xml
- + gm2segs
- help/efetch-help.txt
- help/efilter-help.txt
- help/einfo-errors.txt
- help/elink-help.txt
- help/nquire-help.txt
- help/phrase-search-extras.txt
- help/phrase-search-help.txt
- help/rchive-help.txt
- help/transmute-help.txt
- help/tst-efetch.txt
- help/tst-elink.txt
- help/tst-esearch.txt
- help/tst-esummary.txt
- help/xtract-examples.txt
- help/xtract-help.txt
- help/xtract-unix.txt
- hgvs2spdi
- idx-auid
- + idx-doi
- + idx-errors
- + idx-grant
- idx-stemmed
- − index-extras
- + ini2xml
- join-into-groups-of
- + jsonl2xml
- + just-top-hits
- nhance.sh
- nquire
- + pair-at-a-time
- − phrase-search
- + pm-clean
- pm-prepare
- pm-refresh
- + pm-setup
- + pma2apa
- + pmc2bioc
- + pmc2info
- print-columns
- + print-missing-subranges
- + quote-grouped-elements
- rchive
- + refseq-nm-cds
- snp2tbl
- + sort-by-length
- − stream-pubmed
- + systematic-mutations
- tbl2prod
- test-edirect
- test-eutils
- test-pmc-index
- test-pubmed-index
- − theme-aliases
- + toml2xml
- transmute
- + xcommon.sh
- + xfetch
- + xfetch.ini
- + xfilter
- + xinfo
- + xlink
- xml2fsa
- xml2tbl
- + xsearch
- xtract
- xy-plot
- + yaml2xml

The diff was not included because it is too large.

View it on GitLab: https://salsa.debian.org/med-team/ncbi-entrez-direct/-/compare/a0dd7d23e8fc932f290193a88979890f46d5293a...cf0775c24911ba17639c3275e7049cf85b478c6e

-- 
View it on GitLab: https://salsa.debian.org/med-team/ncbi-entrez-direct/-/compare/a0dd7d23e8fc932f290193a88979890f46d5293a...cf0775c24911ba17639c3275e7049cf85b478c6e
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