[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille (@tille) gitlab at salsa.debian.org
Sun Apr 13 02:43:53 BST 2025



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
b1efca69 by Andreas Tille at 2025-04-13T01:43:48+00:00
automatic update

- - - - -


4 changed files:

- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
- python-team-tests.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,9 +1,9 @@
-Last-Update: Sat, 12 Apr 2025 13:42:04 +0000
+Last-Update: Sun, 13 Apr 2025 01:42:04 +0000
 
  Source                        | Vote   | Tasks                                      |                                 Tags                                 
 -------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
  dicomscope                    |     29 | {imaging}                                  | 
- oscar                         |     19 | {data,practice,tools}                      | 
+ oscar                         |     19 | {practice,data,tools}                      | 
  mrtrix3                       |     14 | {imaging}                                  | 
  orthanc-gdcm                  |     14 | {imaging}                                  | 
  sight                         |     14 | {imaging}                                  | 
@@ -15,7 +15,7 @@ Last-Update: Sat, 12 Apr 2025 13:42:04 +0000
  icb-utils                     |      9 | {bio-dev}                                  | 
  mia                           |      9 | {imaging}                                  | 
  bart-view                     |      8 | {imaging}                                  | 
- king                          |      8 | {typesetting,imaging}                      | 
+ king                          |      8 | {imaging,typesetting}                      | 
  orthanc-mysql                 |      8 | {imaging}                                  | 
  biojava-live                  |      7 | {bio-dev}                                  | 
  jebl2                         |      7 | {bio-dev}                                  | 
@@ -28,39 +28,39 @@ Last-Update: Sat, 12 Apr 2025 13:42:04 +0000
  spread-phy                    |      3 | {bio-phylogeny,bio}                        | 
  staden                        |      3 | {bio}                                      | 
  treeview                      |      3 | {bio-phylogeny,bio}                        | 
- beast-mcmc                    |      2 | {bio,bio-phylogeny}                        | 
+ beast-mcmc                    |      2 | {bio-phylogeny,bio}                        | 
  bitseq                        |      2 | {bio}                                      | 
- dextractor                    |      2 | {bio,covid-19}                             | 
+ dextractor                    |      2 | {covid-19,bio}                             | 
  fastml                        |      2 | {bio}                                      | 
  getdata                       |      2 | {bio}                                      | 
  libdivsufsort                 |      2 | {bio-dev}                                  | 
  librdp-taxonomy-tree-java     |      2 | {bio-dev}                                  | 
  mauve-aligner                 |      2 | {bio}                                      | 
- pigx-rnaseq                   |      2 | {covid-19,bio}                             | 
- proalign                      |      2 | {bio-phylogeny,bio}                        | 
+ pigx-rnaseq                   |      2 | {bio,covid-19}                             | 
+ proalign                      |      2 | {bio,bio-phylogeny}                        | 
  pscan-chip                    |      2 | {bio}                                      | 
  rambo-k                       |      2 | {bio}                                      | 
  rdp-alignment                 |      2 | {bio}                                      | 
  rdp-classifier                |      2 | {bio}                                      | 
- rtax                          |      2 | {cloud,bio}                                | 
+ rtax                          |      2 | {bio,cloud}                                | 
  saint                         |      2 | {bio}                                      | 
  sga                           |      2 | {bio}                                      | 
  soapsnp                       |      2 | {bio}                                      | 
  suitename                     |      2 | {bio}                                      | 
- varscan                       |      2 | {covid-19,bio}                             | 
+ varscan                       |      2 | {bio,covid-19}                             | 
  ants                          |      1 | {imaging}                                  | 
- bio-tradis                    |      1 | {bio,bio-dev}                              | 
+ bio-tradis                    |      1 | {bio-dev,bio}                              | 
  brig                          |      1 | {bio}                                      | 
  cmtk                          |      1 | {imaging}                                  | 
  cufflinks                     |      1 | {cloud,bio}                                | 
  elastix                       |      1 | {imaging}                                  | 
- embassy-domainatrix           |      1 | {cloud,bio}                                | 
+ embassy-domainatrix           |      1 | {bio,cloud}                                | 
  embassy-domalign              |      1 | {bio,cloud}                                | 
- embassy-domsearch             |      1 | {cloud,bio}                                | 
+ embassy-domsearch             |      1 | {bio,cloud}                                | 
  emboss-explorer               |      1 | {bio}                                      | 
  hinge                         |      1 | {bio}                                      | 
  ipig                          |      1 | {bio}                                      | 
- jmodeltest                    |      1 | {bio,bio-phylogeny}                        | 
+ jmodeltest                    |      1 | {bio-phylogeny,bio}                        | 
  kmerresistance                |      1 | {bio}                                      | 
  lamarc                        |      1 | {bio}                                      | 
  libgenome                     |      1 | {bio-dev}                                  | 
@@ -71,31 +71,31 @@ Last-Update: Sat, 12 Apr 2025 13:42:04 +0000
  megan-ce                      |      1 | {bio}                                      | 
  melting                       |      1 | {cloud,bio}                                | 
  metaphlan                     |      1 | {bio}                                      | 
- mhap                          |      1 | {bio,bio-ngs}                              | 
+ mhap                          |      1 | {bio-ngs,bio}                              | 
  milib                         |      1 | {covid-19,bio-dev}                         | 
  ncbi-vdb                      |      1 | {bio-dev}                                  | 
  placnet                       |      1 | {bio}                                      | 
  plasmidseeker                 |      1 | {bio}                                      | 
  python-cgelib                 |      1 | {bio-dev}                                  | 
  python-seqcluster             |      1 | {bio}                                      | 
- python-seqcluster             |      1 | {covid-19,bio-dev}                         | 
+ python-seqcluster             |      1 | {bio-dev,covid-19}                         | 
  qcumber                       |      1 | {bio}                                      | 
  runcircos-gui                 |      1 | {bio}                                      | 
  savvy                         |      1 | {bio}                                      | 
  seq-gen                       |      1 | {bio}                                      | 
- sibsim4                       |      1 | {cloud,bio}                                | 
+ sibsim4                       |      1 | {bio,cloud}                                | 
  sight                         |      1 | {imaging}                                  | 
  skesa                         |      1 | {bio}                                      | 
  soapaligner                   |      1 | {bio}                                      | 
  sprai                         |      1 | {bio}                                      | 
  surankco                      |      1 | {bio}                                      | 
  surpyvor                      |      1 | {bio}                                      | 
- thesias                       |      1 | {bio,covid-19}                             | 
+ thesias                       |      1 | {covid-19,bio}                             | 
  tophat-recondition            |      1 | {bio,covid-19}                             | 
  tracetuner                    |      1 | {bio}                                      | 
  vienna-rna                    |      1 | {bio,covid-19}                             | 
- acedb                         |      0 | {cloud,bio}                                | 
- anfo                          |      0 | {bio,cloud}                                | 
+ acedb                         |      0 | {bio,cloud}                                | 
+ anfo                          |      0 | {cloud,bio}                                | 
  bambamc                       |      0 | {bio-dev}                                  | 
  biojava4-live                 |      0 | {bio-dev}                                  | 
  biosyntax                     |      0 | {bio}                                      | 
@@ -108,7 +108,7 @@ Last-Update: Sat, 12 Apr 2025 13:42:04 +0000
  fis-gtm                       |      0 | {his}                                      | 
  gatk-bwamem                   |      0 | {bio-dev}                                  | 
  gatk-fermilite                |      0 | {bio-dev}                                  | 
- htscodecs                     |      0 | {bio-dev,covid-19}                         | 
+ htscodecs                     |      0 | {covid-19,bio-dev}                         | 
  libbio-mage-utils-perl        |      0 | {bio-dev}                                  | 
  libbioparser-dev              |      0 | {bio-dev}                                  | 
  libbiosoup-dev                |      0 | {bio-dev}                                  | 
@@ -124,7 +124,7 @@ Last-Update: Sat, 12 Apr 2025 13:42:04 +0000
  libgkarrays                   |      0 | {bio-dev}                                  | 
  libhmsbeagle                  |      0 | {bio-dev}                                  | 
  libics                        |      0 | {covid-19,imaging-dev}                     | 
- libmaus2                      |      0 | {covid-19,bio-dev}                         | 
+ libmaus2                      |      0 | {bio-dev,covid-19}                         | 
  libmems                       |      0 | {bio-dev}                                  | 
  libmialm                      |      0 | {imaging-dev}                              | 
  libmuscle                     |      0 | {bio-dev}                                  | 
@@ -152,7 +152,7 @@ Last-Update: Sat, 12 Apr 2025 13:42:04 +0000
  sbmltoolbox                   |      0 | {bio-dev}                                  | 
  sift                          |      0 | {bio}                                      | 
  sight                         |      0 | {imaging-dev}                              | 
- smrtanalysis                  |      0 | {covid-19,bio}                             | 
+ smrtanalysis                  |      0 | {bio,covid-19}                             | 
  srf                           |      0 | {bio-dev}                                  | 
  trace2dbest                   |      0 | {bio}                                      | 
  xdffileio                     |      0 | {imaging-dev}                              | 


=====================================
debian-science-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sat, 12 Apr 2025 13:42:05 +0000
+Last-Update: Sun, 13 Apr 2025 01:42:08 +0000
 
        Source                              | Vote   |             Tasks                                                   |                        Tags                         
 -------------------------------------------+--------+---------------------------------------------------------------------+-----------------------------------------------------
@@ -15,7 +15,7 @@ Last-Update: Sat, 12 Apr 2025 13:42:05 +0000
  ntl                                       |     35 | {mathematics-dev}                                                   | 
  ppl                                       |     34 | {numericalcomputation}                                              | 
  fftw                                      |     33 | {mathematics-dev,physics-dev,meteorology-dev}                       | 
- flann                                     |     33 | {engineering-dev,mathematics-dev}                                   | 
+ flann                                     |     33 | {mathematics-dev,engineering-dev}                                   | 
  imview                                    |     32 | {viewing}                                                           | 
  flintqs                                   |     29 | {mathematics}                                                       | 
  mbpoll                                    |     29 | {simulations}                                                       | 
@@ -32,11 +32,11 @@ Last-Update: Sat, 12 Apr 2025 13:42:05 +0000
  picosat                                   |     18 | {logic}                                                             | 
  libitpp                                   |     17 | {engineering-dev,mathematics-dev}                                   | 
  sat4j                                     |     17 | {logic}                                                             | 
- fftw                                      |     16 | {physics-dev,meteorology-dev,mathematics-dev}                       | 
+ fftw                                      |     16 | {meteorology-dev,mathematics-dev,physics-dev}                       | 
  metar                                     |     15 | {meteorology}                                                       | 
  cliquer                                   |     14 | {mathematics-dev}                                                   | 
  pcl                                       |     14 | {robotics-dev}                                                      | 
- rubiks                                    |     14 | {mathematics,geometry}                                              | 
+ rubiks                                    |     14 | {geometry,mathematics}                                              | 
  dune-uggrid                               |     13 | {mathematics-dev}                                                   | 
  setzer                                    |     13 | {typesetting}                                                       | 
  teem                                      |     13 | {imageanalysis}                                                     | 
@@ -48,25 +48,25 @@ Last-Update: Sat, 12 Apr 2025 13:42:05 +0000
  iml                                       |     11 | {mathematics-dev}                                                   | 
  libhomfly                                 |     11 | {mathematics-dev}                                                   | 
  libm4rie                                  |     11 | {mathematics-dev}                                                   | 
- matlab-support                            |     11 | {mathematics,numericalcomputation}                                  | 
+ matlab-support                            |     11 | {numericalcomputation,mathematics}                                  | 
  coinor-symphony                           |     10 | {numericalcomputation,mathematics,logic}                            | 
  guiqwt                                    |     10 | {numericalcomputation,viewing}                                      | 
  libccp4                                   |     10 | {nanoscale-physics-dev}                                             | 
  muparser                                  |     10 | {mathematics-dev}                                                   | 
- python-escript                            |     10 | {numericalcomputation,engineering,simulations}                      | 
+ python-escript                            |     10 | {simulations,engineering,numericalcomputation}                      | 
  form                                      |      9 | {mathematics}                                                       | 
  geg                                       |      9 | {viewing}                                                           | 
  lxi-tools                                 |      9 | {dataacquisition,engineering}                                       | 
- persalys                                  |      9 | {engineering,statistics,mathematics}                                | 
+ persalys                                  |      9 | {mathematics,engineering,statistics}                                | 
  python-cdo                                |      9 | {meteorology}                                                       | 
  auto-07p                                  |      8 | {mathematics}                                                       | 
- debian-science                            |      8 | {mathematics,machine-learning,economics,nanoscale-physics,physics}  | 
- persalys                                  |      8 | {engineering,mathematics,statistics}                                | 
+ debian-science                            |      8 | {physics,economics,nanoscale-physics,machine-learning,mathematics}  | 
+ persalys                                  |      8 | {engineering,statistics,mathematics}                                | 
  rheolef                                   |      8 | {mathematics}                                                       | 
  ros-rosconsole                            |      8 | {robotics-dev}                                                      | 
  vdt                                       |      8 | {mathematics-dev}                                                   | 
  apophenia                                 |      7 | {statistics}                                                        | 
- getdp                                     |      7 | {simulations,mathematics,engineering}                               | 
+ getdp                                     |      7 | {engineering,mathematics,simulations}                               | 
  gf2x                                      |      7 | {mathematics-dev}                                                   | 
  magics++                                  |      7 | {meteorology-dev}                                                   | 
  odc                                       |      7 | {meteorology-dev}                                                   | 
@@ -74,16 +74,16 @@ Last-Update: Sat, 12 Apr 2025 13:42:05 +0000
  urdfdom-headers                           |      7 | {robotics-dev}                                                      | 
  coda                                      |      6 | {meteorology}                                                       | 
  coda                                      |      6 | {meteorology-dev}                                                   | 
- debian-science                            |      6 | {nanoscale-physics,statistics,physics,economics}                    | 
+ debian-science                            |      6 | {nanoscale-physics,economics,statistics,physics}                    | 
  polylib                                   |      6 | {mathematics}                                                       | 
  refmac-dictionary                         |      6 | {highenergy-physics-dev,chemistry}                                  | 
  sac2mseed                                 |      6 | {geography}                                                         | 
  sagemath-database-conway-polynomials      |      6 | {mathematics}                                                       | 
- toulbar2                                  |      6 | {mathematics,physics,logic,numericalcomputation}                    | 
+ toulbar2                                  |      6 | {logic,mathematics,physics,numericalcomputation}                    | 
  uctodata                                  |      6 | {linguistics}                                                       | 
  alberta                                   |      5 | {engineering-dev}                                                   | 
  cld2                                      |      5 | {linguistics}                                                       | 
- debian-science                            |      5 | {machine-learning,economics,nanoscale-physics,physics}              | 
+ debian-science                            |      5 | {physics,economics,machine-learning,nanoscale-physics}              | 
  dxsamples                                 |      5 | {nanoscale-physics}                                                 | 
  fpzip                                     |      5 | {meteorology}                                                       | 
  libcgns                                   |      5 | {engineering}                                                       | 
@@ -101,7 +101,7 @@ Last-Update: Sat, 12 Apr 2025 13:42:05 +0000
  iapws                                     |      4 | {meteorology}                                                       | 
  libcgns                                   |      4 | {engineering-dev}                                                   | 
  libmatheval                               |      4 | {mathematics}                                                       | 
- libvigraimpex                             |      4 | {machine-learning,imageanalysis-dev}                                | 
+ libvigraimpex                             |      4 | {imageanalysis-dev,machine-learning}                                | 
  psurface                                  |      4 | {numericalcomputation}                                              | 
  scram                                     |      4 | {engineering}                                                       | 
  sdpb                                      |      4 | {numericalcomputation,highenergy-physics}                           | 
@@ -129,9 +129,9 @@ Last-Update: Sat, 12 Apr 2025 13:42:05 +0000
  ros-ros-environment                       |      3 | {robotics-dev}                                                      | 
  silo-llnl                                 |      3 | {engineering-dev}                                                   | 
  toon                                      |      3 | {numericalcomputation}                                              | 
- trilinos                                  |      3 | {engineering-dev,physics-dev,mathematics-dev}                       | 
+ trilinos                                  |      3 | {mathematics-dev,physics-dev,engineering-dev}                       | 
  clipper                                   |      2 | {nanoscale-physics-dev}                                             | 
- coinmp                                    |      2 | {logic,mathematics-dev,numericalcomputation}                        | 
+ coinmp                                    |      2 | {numericalcomputation,logic,mathematics-dev}                        | 
  debian-science                            |      2 | {tools}                                                             | 
  debian-science                            |      2 | {economics}                                                         | 
  debian-science                            |      2 | {electrophysiology}                                                 | 
@@ -143,14 +143,14 @@ Last-Update: Sat, 12 Apr 2025 13:42:05 +0000
  hdf-eos4                                  |      2 | {meteorology-dev}                                                   | 
  ipe-tools                                 |      2 | {typesetting}                                                       | 
  irstlm                                    |      2 | {linguistics}                                                       | 
- jeuclid                                   |      2 | {typesetting,viewing}                                               | 
+ jeuclid                                   |      2 | {viewing,typesetting}                                               | 
  libcvd                                    |      2 | {imageanalysis-dev}                                                 | 
  liblbfgs                                  |      2 | {mathematics-dev}                                                   | 
  liblxi                                    |      2 | {dataacquisition-dev,engineering-dev}                               | 
- mmdb                                      |      2 | {highenergy-physics-dev,nanoscale-physics-dev}                      | 
+ mmdb                                      |      2 | {nanoscale-physics-dev,highenergy-physics-dev}                      | 
  mseed2sac                                 |      2 | {dataacquisition-dev}                                               | 
- ncrystal                                  |      2 | {nanoscale-physics-dev,highenergy-physics-dev}                      | 
- neartree                                  |      2 | {mathematics-dev,numericalcomputation}                              | 
+ ncrystal                                  |      2 | {highenergy-physics-dev,nanoscale-physics-dev}                      | 
+ neartree                                  |      2 | {numericalcomputation,mathematics-dev}                              | 
  newmat                                    |      2 | {mathematics-dev}                                                   | 
  nrn-iv                                    |      2 | {biology}                                                           | 
  nrn-mod2c                                 |      2 | {biology}                                                           | 
@@ -159,7 +159,7 @@ Last-Update: Sat, 12 Apr 2025 13:42:05 +0000
  ros-vcstool                               |      2 | {robotics-dev}                                                      | 
  silo-llnl                                 |      2 | {engineering}                                                       | 
  spaghetti                                 |      2 | {geography}                                                         | 
- spfft                                     |      2 | {physics-dev,mathematics-dev,meteorology-dev,nanoscale-physics-dev} | 
+ spfft                                     |      2 | {nanoscale-physics-dev,physics-dev,mathematics-dev,meteorology-dev} | 
  apache-opennlp                            |      1 | {linguistics}                                                       | 
  apertium-eval-translator                  |      1 | {linguistics}                                                       | 
  apertium-streamparser                     |      1 | {linguistics}                                                       | 
@@ -191,7 +191,7 @@ Last-Update: Sat, 12 Apr 2025 13:42:05 +0000
  quadrule                                  |      1 | {mathematics-dev}                                                   | 
  robot-testing-framework                   |      1 | {robotics-dev}                                                      | 
  sardana                                   |      1 | {dataacquisition}                                                   | 
- schroedinger-coordgenlibs                 |      1 | {chemistry,nanoscale-physics-dev}                                   | 
+ schroedinger-coordgenlibs                 |      1 | {nanoscale-physics-dev,chemistry}                                   | 
  sparskit                                  |      1 | {mathematics-dev}                                                   | 
  ssm                                       |      1 | {nanoscale-physics-dev}                                             | 
  timbl                                     |      1 | {linguistics}                                                       | 
@@ -210,7 +210,7 @@ Last-Update: Sat, 12 Apr 2025 13:42:05 +0000
  apertium-urd-hin                          |      0 | {linguistics}                                                       | 
  apriltag                                  |      0 | {robotics-dev}                                                      | 
  asl                                       |      0 | {physics-dev}                                                       | 
- calculix-ccx-test                         |      0 | {numericalcomputation,simulations,engineering}                      | 
+ calculix-ccx-test                         |      0 | {engineering,simulations,numericalcomputation}                      | 
  ckon                                      |      0 | {highenergy-physics-dev}                                            | 
  clhep                                     |      0 | {highenergy-physics-dev}                                            | 
  coda                                      |      0 | {meteorology-dev}                                                   | 
@@ -254,7 +254,7 @@ Last-Update: Sat, 12 Apr 2025 13:42:05 +0000
  sagemath-database-elliptic-curves         |      0 | {mathematics}                                                       | 
  sagemath-database-graphs                  |      0 | {mathematics}                                                       | 
  sagemath-database-polytopes               |      0 | {mathematics}                                                       | 
- schroedinger-maeparser                    |      0 | {chemistry,nanoscale-physics-dev}                                   | 
+ schroedinger-maeparser                    |      0 | {nanoscale-physics-dev,chemistry}                                   | 
  siscone                                   |      0 | {highenergy-physics-dev}                                            | 
  slicot                                    |      0 | {engineering-dev,robotics-dev}                                      | 
  ssm                                       |      0 | {nanoscale-physics}                                                 | 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.

=====================================
python-team-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sat, 12 Apr 2025 13:42:07 +0000
+Last-Update: Sun, 13 Apr 2025 01:42:12 +0000
 
      Source                             | Vote   |                          Tags                          
 ----------------------------------------+--------+--------------------------------------------------------



View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b1efca697b8e0d140fa79a39eeda3c9d088318d9

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