[med-svn] [Git][med-team/htslib][master] 5 commits: New upstream version 1.22.1+ds

[Steffen Möller (@moeller)]

Steffen Möller pushed to branch master at Debian Med / htslib


Commits:
e1566aaf by Steffen Moeller at 2025-08-17T21:04:46+02:00
New upstream version 1.22.1+ds
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81b8b8bc by Steffen Moeller at 2025-08-17T21:04:46+02:00
New upstream version

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ae2aee73 by Steffen Moeller at 2025-08-17T21:04:49+02:00
Update upstream source from tag 'upstream/1.22.1+ds'

Update to upstream version '1.22.1+ds'
with Debian dir 38252ae5424480b60e983c41d408839824a3b17c
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8ceef9f5 by Steffen Moeller at 2025-08-17T21:04:49+02:00
Standards-Version: 4.7.2 (routine-update)

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cc309aae by Steffen Moeller at 2025-08-17T21:36:53+02:00
New upstream version 1.22

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109 changed files:

- INSTALL
- LICENSE
- Makefile
- NEWS
- annot-tsv.1
- annot-tsv.c
- bcf_sr_sort.c
- bcf_sr_sort.h
- bgzf.c
- bgzip.1
- bgzip.c
- config.mk.in
- configure.ac
- cram/cram_codecs.c
- cram/cram_decode.c
- cram/cram_encode.c
- cram/cram_index.c
- cram/cram_io.c
- cram/cram_io.h
- cram/cram_structs.h
- cram/open_trace_file.c
- cram/open_trace_file.h
- debian/changelog
- debian/control
- debian/copyright
- debian/patches/fix_float_precision
- debian/patches/fix_sequence_of_linked_libs.patch
- debian/patches/testShebang.patch
- debian/upstream/metadata
- header.c
- hfile.c
- hfile_libcurl.c
- hts.c
- hts_internal.h
- htsfile.1
- htsfile.c
- htslib-s3-plugin.7
- htslib.pc.in
- htslib/bgzf.h
- htslib/hts.h
- htslib/hts_defs.h
- htslib/kstring.h
- htslib/sam.h
- htslib/synced_bcf_reader.h
- htslib/thread_pool.h
- htslib/vcf.h
- m4/hts_hide_dynamic_syms.m4
- + ref_cache/cmsg_wrap.c
- + ref_cache/cmsg_wrap.h
- + ref_cache/http_parser.c
- + ref_cache/http_parser.h
- + ref_cache/listener.c
- + ref_cache/listener.h
- + ref_cache/log_files.c
- + ref_cache/log_files.h
- + ref_cache/main.c
- + ref_cache/misc.c
- + ref_cache/misc.h
- + ref_cache/options.h
- + ref_cache/ping.c
- + ref_cache/ping.h
- + ref_cache/poll_wrap.h
- + ref_cache/poll_wrap_epoll.c
- + ref_cache/poll_wrap_poll.c
- + ref_cache/ref-cache.1
- + ref_cache/ref_files.c
- + ref_cache/ref_files.h
- + ref_cache/request_handler.c
- + ref_cache/request_handler.h
- + ref_cache/sendfile_wrap.c
- + ref_cache/sendfile_wrap.h
- + ref_cache/server.c
- + ref_cache/server.h
- + ref_cache/transaction.c
- + ref_cache/transaction.h
- + ref_cache/types.h
- + ref_cache/upstream.c
- + ref_cache/upstream.h
- sam.c
- sam_internal.h
- simd.c
- synced_bcf_reader.c
- tabix.1
- tabix.c
- tbx.c
- + test/annot-tsv/dst.14.txt
- + test/annot-tsv/out.14.1.txt
- + test/annot-tsv/out.14.2.txt
- + test/annot-tsv/src.14.txt
- test/compare_sam.pl
- + test/ref_cache/ce_m5.sam
- test/sam.c
- test/test-bcf-sr.c
- test/test-bcf-sr.pl
- test/test-bcf_set_variant_type.c
- test/test-vcf-api.c
- test/test.pl
- test/test_khash.c
- test/test_kstring.c
- test/thrash_threads4.c
- test/thrash_threads6.c
- test/thrash_threads7.c
- + test/vcf44_1.expected
- + test/vcf44_1.vcf
- test/with-shlib.sh
- + test/xx#u.sam
- thread_pool.c
- vcf.c
- version.sh


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/htslib/-/compare/7a213d647233c73ec8cabbf3bb5ed90fc9c1cdb0...cc309aaefb9958a66a56c80b1c1d06e6c5f86440

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View it on GitLab: https://salsa.debian.org/med-team/htslib/-/compare/7a213d647233c73ec8cabbf3bb5ed90fc9c1cdb0...cc309aaefb9958a66a56c80b1c1d06e6c5f86440
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