[med-svn] [Git][med-team/htslib][upstream] New upstream version 1.22.1+ds

[Steffen Möller (@moeller)]

Steffen Möller pushed to branch upstream at Debian Med / htslib


Commits:
e1566aaf by Steffen Moeller at 2025-08-17T21:04:46+02:00
New upstream version 1.22.1+ds
- - - - -


102 changed files:

- INSTALL
- LICENSE
- Makefile
- NEWS
- annot-tsv.1
- annot-tsv.c
- bcf_sr_sort.c
- bcf_sr_sort.h
- bgzf.c
- bgzip.1
- bgzip.c
- config.mk.in
- configure.ac
- cram/cram_codecs.c
- cram/cram_decode.c
- cram/cram_encode.c
- cram/cram_index.c
- cram/cram_io.c
- cram/cram_io.h
- cram/cram_structs.h
- cram/open_trace_file.c
- cram/open_trace_file.h
- header.c
- hfile.c
- hfile_libcurl.c
- hts.c
- hts_internal.h
- htsfile.1
- htsfile.c
- htslib-s3-plugin.7
- htslib.pc.in
- htslib/bgzf.h
- htslib/hts.h
- htslib/hts_defs.h
- htslib/kstring.h
- htslib/sam.h
- htslib/synced_bcf_reader.h
- htslib/thread_pool.h
- htslib/vcf.h
- m4/hts_hide_dynamic_syms.m4
- + ref_cache/cmsg_wrap.c
- + ref_cache/cmsg_wrap.h
- + ref_cache/http_parser.c
- + ref_cache/http_parser.h
- + ref_cache/listener.c
- + ref_cache/listener.h
- + ref_cache/log_files.c
- + ref_cache/log_files.h
- + ref_cache/main.c
- + ref_cache/misc.c
- + ref_cache/misc.h
- + ref_cache/options.h
- + ref_cache/ping.c
- + ref_cache/ping.h
- + ref_cache/poll_wrap.h
- + ref_cache/poll_wrap_epoll.c
- + ref_cache/poll_wrap_poll.c
- + ref_cache/ref-cache.1
- + ref_cache/ref_files.c
- + ref_cache/ref_files.h
- + ref_cache/request_handler.c
- + ref_cache/request_handler.h
- + ref_cache/sendfile_wrap.c
- + ref_cache/sendfile_wrap.h
- + ref_cache/server.c
- + ref_cache/server.h
- + ref_cache/transaction.c
- + ref_cache/transaction.h
- + ref_cache/types.h
- + ref_cache/upstream.c
- + ref_cache/upstream.h
- sam.c
- sam_internal.h
- simd.c
- synced_bcf_reader.c
- tabix.1
- tabix.c
- tbx.c
- + test/annot-tsv/dst.14.txt
- + test/annot-tsv/out.14.1.txt
- + test/annot-tsv/out.14.2.txt
- + test/annot-tsv/src.14.txt
- test/compare_sam.pl
- + test/ref_cache/ce_m5.sam
- test/sam.c
- test/test-bcf-sr.c
- test/test-bcf-sr.pl
- test/test-bcf_set_variant_type.c
- test/test-vcf-api.c
- test/test.pl
- test/test_khash.c
- test/test_kstring.c
- test/thrash_threads4.c
- test/thrash_threads6.c
- test/thrash_threads7.c
- + test/vcf44_1.expected
- + test/vcf44_1.vcf
- test/with-shlib.sh
- + test/xx#u.sam
- thread_pool.c
- vcf.c
- version.sh


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/htslib/-/commit/e1566aaf090c81c60a07f65f66eb4f5bcdbc95ee

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View it on GitLab: https://salsa.debian.org/med-team/htslib/-/commit/e1566aaf090c81c60a07f65f66eb4f5bcdbc95ee
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