[med-svn] [Git][med-team/ugene][master] 8 commits: New upstream version 52.0+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / ugene


Commits:
2f21caa3 by Michael R. Crusoe at 2025-01-24T10:45:23+01:00
New upstream version 52.0+dfsg
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0789b22a by Pierre Gruet at 2025-08-21T12:24:10+02:00
New upstream version 52.1+dfsg
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0d2083fd by Pierre Gruet at 2025-08-21T12:24:36+02:00
Update upstream source from tag 'upstream/52.1+dfsg'

Update to upstream version '52.1+dfsg'
with Debian dir c0d079917622a874d2a5f70bbab25448159e2639
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026e50b2 by Pierre Gruet at 2025-08-21T12:24:52+02:00
Raising Standards version to 4.7.2 (no change)

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6bd09be8 by Pierre Gruet at 2025-08-23T07:51:09+02:00
Building with gcc-15

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9a0d2590 by Pierre Gruet at 2025-08-23T07:51:43+02:00
Passing the preprocessor variable UGENE_VERSION through d/rules

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2cbea6a3 by Pierre Gruet at 2025-08-23T07:52:15+02:00
Updating changelog

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d4d681c3 by Pierre Gruet at 2025-08-23T07:52:23+02:00
Upload to unstable

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4802 changed files:

- .gitignore
- README.md
- + cmake/CollectTranslations.cmake
- + cmake/Common.cmake
- + cmake/Environment.cmake
- src/Plugin.cmake → cmake/Plugin.cmake
- + cmake/PluginDescriptor.cmake
- + cmake/Version.cmake
- debian/changelog
- debian/control
- + debian/patches/gcc-15.patch
- debian/patches/series
- debian/rules
- etc/script/linux/build.sh
- etc/script/linux/copy_qt_files_to_ugene.sh
- etc/script/linux/release-bundle.txt
- etc/script/linux/release.sh
- etc/script/mac/build.sh
- etc/script/mac/bundle.sh
- + etc/script/mac/fix-rpath.sh
- etc/script/mac/release-bundle.txt
- etc/script/mac/release.sh
- src/corelibs/U2Algorithm/src/misc/BitsTable.cpp
- src/corelibs/U2Algorithm/src/misc/BitsTable.h
- src/corelibs/U2Algorithm/src/misc/CDSearchTaskFactory.h
- src/corelibs/U2Algorithm/src/misc/DnaAssemblyMultiTask.cpp
- src/corelibs/U2Algorithm/src/misc/DnaAssemblyMultiTask.h
- src/corelibs/U2Algorithm/src/misc/DynTable.h
- src/corelibs/U2Algorithm/src/misc/EnzymeModel.cpp
- src/corelibs/U2Algorithm/src/misc/EnzymeModel.h
- src/corelibs/U2Algorithm/src/misc/FindAlgorithm.cpp
- src/corelibs/U2Algorithm/src/misc/FindAlgorithm.h
- src/corelibs/U2Algorithm/src/misc/FindAlgorithmTask.cpp
- src/corelibs/U2Algorithm/src/misc/FindAlgorithmTask.h
- src/corelibs/U2Algorithm/src/misc/GenomeAssemblyMultiTask.cpp
- src/corelibs/U2Algorithm/src/misc/GenomeAssemblyMultiTask.h
- src/corelibs/U2Algorithm/src/misc/RepeatFinderSettings.h
- src/corelibs/U2Algorithm/src/misc/RepeatFinderTaskFactory.h
- src/corelibs/U2Algorithm/src/misc/RollingArray.h
- src/corelibs/U2Algorithm/src/misc/RollingMatrix.h
- src/corelibs/U2Algorithm/src/misc/SequenceContentFilterTask.cpp
- src/corelibs/U2Algorithm/src/misc/SequenceContentFilterTask.h
- src/corelibs/U2Algorithm/src/misc/SyncSort.h
- src/corelibs/U2Algorithm/src/molecular_geometry/GeomUtils.cpp
- src/corelibs/U2Algorithm/src/molecular_geometry/GeomUtils.h
- src/corelibs/U2Algorithm/src/molecular_geometry/MolecularSurface.cpp
- src/corelibs/U2Algorithm/src/molecular_geometry/MolecularSurface.h
- src/corelibs/U2Algorithm/src/molecular_geometry/MolecularSurfaceFactoryRegistry.cpp
- src/corelibs/U2Algorithm/src/molecular_geometry/MolecularSurfaceFactoryRegistry.h
- src/corelibs/U2Algorithm/src/molecular_geometry/VanDerWaalsSurface.cpp
- src/corelibs/U2Algorithm/src/molecular_geometry/VanDerWaalsSurface.h
- src/corelibs/U2Algorithm/src/msa_alignment/AbstractAlignmentTask.cpp
- src/corelibs/U2Algorithm/src/msa_alignment/AbstractAlignmentTask.h
- src/corelibs/U2Algorithm/src/msa_alignment/AlignSequencesToAlignmentTaskSettings.cpp
- src/corelibs/U2Algorithm/src/msa_alignment/AlignSequencesToAlignmentTaskSettings.h
- src/corelibs/U2Algorithm/src/msa_alignment/BaseAlignmentAlgorithmIds.cpp
- src/corelibs/U2Algorithm/src/msa_alignment/BaseAlignmentAlgorithmIds.h
- src/corelibs/U2Algorithm/src/msa_alignment/SimpleAddingToAlignment.cpp
- src/corelibs/U2Algorithm/src/msa_alignment/SimpleAddingToAlignment.h
- src/corelibs/U2Algorithm/src/pairwise_alignment/NWAligner.cpp
- src/corelibs/U2Algorithm/src/pairwise_alignment/NWAligner.h
- src/corelibs/U2Algorithm/src/pairwise_alignment/PairwiseAligner.cpp
- src/corelibs/U2Algorithm/src/pairwise_alignment/PairwiseAligner.h
- src/corelibs/U2Algorithm/src/pairwise_alignment/PairwiseAlignmentTask.cpp
- src/corelibs/U2Algorithm/src/pairwise_alignment/PairwiseAlignmentTask.h
- src/corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.cpp
- src/corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h
- src/corelibs/U2Algorithm/src/phyltree/PhyTreeGenerator.h
- src/corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorRegistry.cpp
- src/corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorRegistry.h
- src/corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorTask.cpp
- src/corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorTask.h
- src/corelibs/U2Algorithm/src/registry/AlignmentAlgorithmsRegistry.cpp
- src/corelibs/U2Algorithm/src/registry/AlignmentAlgorithmsRegistry.h
- src/corelibs/U2Algorithm/src/registry/CDSearchTaskFactoryRegistry.h
- src/corelibs/U2Algorithm/src/registry/DnaAssemblyAlgRegistry.cpp
- src/corelibs/U2Algorithm/src/registry/DnaAssemblyAlgRegistry.h
- src/corelibs/U2Algorithm/src/registry/DnaAssemblyTask.cpp
- src/corelibs/U2Algorithm/src/registry/DnaAssemblyTask.h
- src/corelibs/U2Algorithm/src/registry/GenomeAssemblyRegistry.cpp
- src/corelibs/U2Algorithm/src/registry/GenomeAssemblyRegistry.h
- src/corelibs/U2Algorithm/src/registry/RepeatFinderTaskFactoryRegistry.cpp
- src/corelibs/U2Algorithm/src/registry/RepeatFinderTaskFactoryRegistry.h
- src/corelibs/U2Algorithm/src/registry/SecStructPredictAlgRegistry.cpp
- src/corelibs/U2Algorithm/src/registry/SecStructPredictAlgRegistry.h
- src/corelibs/U2Algorithm/src/registry/SecStructPredictTask.cpp
- src/corelibs/U2Algorithm/src/registry/SecStructPredictTask.h
- src/corelibs/U2Algorithm/src/registry/SplicedAlignmentTask.cpp
- src/corelibs/U2Algorithm/src/registry/SplicedAlignmentTask.h
- src/corelibs/U2Algorithm/src/registry/SplicedAlignmentTaskRegistry.cpp
- src/corelibs/U2Algorithm/src/registry/SplicedAlignmentTaskRegistry.h
- src/corelibs/U2Algorithm/src/registry/SubstMatrixRegistry.cpp
- src/corelibs/U2Algorithm/src/registry/SubstMatrixRegistry.h
- src/corelibs/U2Algorithm/src/smith_waterman/SWMulAlignExternalPropTag.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SWMulAlignExternalPropTag.h
- src/corelibs/U2Algorithm/src/smith_waterman/SWMulAlignResultNamesTag.h
- src/corelibs/U2Algorithm/src/smith_waterman/SWMulAlignResultNamesTagsRegistry.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SWMulAlignResultNamesTagsRegistry.h
- src/corelibs/U2Algorithm/src/smith_waterman/SWMulAlignSeqPrefixTag.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SWMulAlignSeqPrefixTag.h
- src/corelibs/U2Algorithm/src/smith_waterman/SWMulAlignSubseqPropTag.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SWMulAlignSubseqPropTag.h
- src/corelibs/U2Algorithm/src/smith_waterman/SWResultFilterRegistry.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SWResultFilterRegistry.h
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactory.h
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactoryRegistry.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactoryRegistry.h
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanUtil.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanUtil.h
- src/corelibs/U2Algorithm/src/structural_alignment/StructuralAlignmentAlgorithm.cpp
- src/corelibs/U2Algorithm/src/structural_alignment/StructuralAlignmentAlgorithm.h
- src/corelibs/U2Algorithm/src/structural_alignment/StructuralAlignmentAlgorithmFactory.cpp
- src/corelibs/U2Algorithm/src/structural_alignment/StructuralAlignmentAlgorithmFactory.h
- src/corelibs/U2Algorithm/src/structural_alignment/StructuralAlignmentAlgorithmRegistry.cpp
- src/corelibs/U2Algorithm/src/structural_alignment/StructuralAlignmentAlgorithmRegistry.h
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusAlgorithm.cpp
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusAlgorithm.h
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusAlgorithmDefault.cpp
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusAlgorithmDefault.h
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusAlgorithmRegistry.cpp
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusAlgorithmRegistry.h
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusAlgorithmSamtools.cpp
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusAlgorithmSamtools.h
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusUtils.cpp
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusUtils.h
- src/corelibs/U2Algorithm/src/util_assembly_consensus/BuiltInAssemblyConsensusAlgorithms.cpp
- src/corelibs/U2Algorithm/src/util_assembly_consensus/BuiltInAssemblyConsensusAlgorithms.h
- src/corelibs/U2Algorithm/src/util_msa_consensus/BuiltInConsensusAlgorithms.cpp
- src/corelibs/U2Algorithm/src/util_msa_consensus/BuiltInConsensusAlgorithms.h
- src/corelibs/U2Algorithm/src/util_msa_consensus/MaConsensusAlgorithmSimpleExtended.cpp
- src/corelibs/U2Algorithm/src/util_msa_consensus/MaConsensusAlgorithmSimpleExtended.h
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithm.cpp
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithm.h
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmClustal.cpp
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmClustal.h
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmDefault.cpp
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmDefault.h
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmLevitsky.cpp
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmLevitsky.h
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmRegistry.cpp
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmRegistry.h
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmStrict.cpp
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmStrict.h
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusUtils.cpp
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusUtils.h
- src/corelibs/U2Algorithm/src/util_msa_distance/BuiltInDistanceAlgorithms.cpp
- src/corelibs/U2Algorithm/src/util_msa_distance/BuiltInDistanceAlgorithms.h
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithm.cpp
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithm.h
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithmHamming.cpp
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithmHamming.h
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithmHammingRevCompl.cpp
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithmHammingRevCompl.h
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithmRegistry.cpp
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithmRegistry.h
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithmSimilarity.cpp
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithmSimilarity.h
- src/corelibs/U2Algorithm/src/util_msaedit/CreateSubalignmentTask.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/CreateSubalignmentTask.h
- src/corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/ColorSchemeUtils.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/ColorSchemeUtils.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorScheme.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorScheme.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemeClustalX.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemeClustalX.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemeCustom.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemeCustom.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemePercentageIdententityGrayscale.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemePercentageIdententityGrayscale.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemePercentageIdentity.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemePercentageIdentity.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemeStatic.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemeStatic.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemeWeakSimilarities.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemeWeakSimilarities.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/percentage_idententity/colored/ColumnCharsCounter.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/percentage_idententity/colored/ColumnCharsCounter.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/percentage_idententity/colored/MsaColorSchemePercentageIdententityColored.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/percentage_idententity/colored/MsaColorSchemePercentageIdententityColored.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/percentage_idententity/colored/MsaColorSchemePercentageIdententityColoredFactory.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/percentage_idententity/colored/MsaColorSchemePercentageIdententityColoredFactory.h
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingScheme.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingScheme.h
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeAgreements.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeAgreements.h
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeConservation.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeConservation.h
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeDisagreements.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeDisagreements.h
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeGaps.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeGaps.h
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeNoColors.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeNoColors.h
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeTransitions.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeTransitions.h
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeTransversions.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeTransversions.h
- src/corelibs/U2Algorithm/src/util_orf/ORFAlgorithmTask.cpp
- src/corelibs/U2Algorithm/src/util_orf/ORFAlgorithmTask.h
- src/corelibs/U2Algorithm/src/util_orf/ORFFinder.cpp
- src/corelibs/U2Algorithm/src/util_orf/ORFFinder.h
- src/corelibs/U2Algorithm/src/util_sarray/SArrayBasedFindTask.cpp
- src/corelibs/U2Algorithm/src/util_sarray/SArrayBasedFindTask.h
- src/corelibs/U2Algorithm/src/util_sarray/SArrayIndex.cpp
- src/corelibs/U2Algorithm/src/util_sarray/SArrayIndex.h
- src/corelibs/U2Algorithm/src/util_sarray/SArrayIndexSerializer.cpp
- src/corelibs/U2Algorithm/src/util_sarray/SArrayIndexSerializer.h
- src/corelibs/U2Algorithm/src/util_weight_matrix/BuiltInPWMConversionAlgorithms.cpp
- src/corelibs/U2Algorithm/src/util_weight_matrix/BuiltInPWMConversionAlgorithms.h
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithm.cpp
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithm.h
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmBVH.cpp
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmBVH.h
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmLOD.cpp
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmLOD.h
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmMCH.cpp
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmMCH.h
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmNLG.cpp
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmNLG.h
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmRegistry.cpp
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmRegistry.h
- src/corelibs/U2Core/src/cmdline/CMDLineCoreOptions.cpp
- src/corelibs/U2Core/src/cmdline/CMDLineCoreOptions.h
- src/corelibs/U2Core/src/cmdline/CMDLineHelpProvider.h
- src/corelibs/U2Core/src/cmdline/CMDLineRegistry.cpp
- src/corelibs/U2Core/src/cmdline/CMDLineRegistry.h
- src/corelibs/U2Core/src/cmdline/CMDLineUtils.cpp
- src/corelibs/U2Core/src/cmdline/CMDLineUtils.h
- src/corelibs/U2Core/src/datatype/Annotation.cpp
- src/corelibs/U2Core/src/datatype/Annotation.h
- src/corelibs/U2Core/src/datatype/AnnotationData.cpp
- src/corelibs/U2Core/src/datatype/AnnotationData.h
- src/corelibs/U2Core/src/datatype/AnnotationGroup.cpp
- src/corelibs/U2Core/src/datatype/AnnotationGroup.h
- src/corelibs/U2Core/src/datatype/AnnotationModification.cpp
- src/corelibs/U2Core/src/datatype/AnnotationModification.h
- src/corelibs/U2Core/src/datatype/AnnotationSettings.cpp
- src/corelibs/U2Core/src/datatype/AnnotationSettings.h
- src/corelibs/U2Core/src/datatype/AnnotationTableObjectConstraints.cpp
- src/corelibs/U2Core/src/datatype/AnnotationTableObjectConstraints.h
- src/corelibs/U2Core/src/datatype/BaseAlphabets.cpp
- src/corelibs/U2Core/src/datatype/BaseTranslations.cpp
- src/corelibs/U2Core/src/datatype/BioStruct3D.cpp
- src/corelibs/U2Core/src/datatype/BioStruct3D.h
- src/corelibs/U2Core/src/datatype/Chromatogram.cpp
- src/corelibs/U2Core/src/datatype/Chromatogram.h
- src/corelibs/U2Core/src/datatype/DIProperties.h
- src/corelibs/U2Core/src/datatype/DNAAlphabet.cpp
- src/corelibs/U2Core/src/datatype/DNAAlphabet.h
- src/corelibs/U2Core/src/datatype/DNAAlphabetRegistryImpl.cpp
- src/corelibs/U2Core/src/datatype/DNAAlphabetRegistryImpl.h
- src/corelibs/U2Core/src/datatype/DNAInfo.cpp
- src/corelibs/U2Core/src/datatype/DNAInfo.h
- src/corelibs/U2Core/src/datatype/DNAQuality.cpp
- src/corelibs/U2Core/src/datatype/DNAQuality.h
- src/corelibs/U2Core/src/datatype/DNASequence.cpp
- src/corelibs/U2Core/src/datatype/DNASequence.h
- src/corelibs/U2Core/src/datatype/DNASequenceUtils.cpp
- src/corelibs/U2Core/src/datatype/DNASequenceUtils.h
- src/corelibs/U2Core/src/datatype/DNATranslation.cpp
- src/corelibs/U2Core/src/datatype/DNATranslation.h
- src/corelibs/U2Core/src/datatype/DNATranslationImpl.cpp
- src/corelibs/U2Core/src/datatype/DNATranslationImpl.h
- src/corelibs/U2Core/src/datatype/FeatureColors.cpp
- src/corelibs/U2Core/src/datatype/FeatureColors.h
- src/corelibs/U2Core/src/datatype/Matrix44.cpp
- src/corelibs/U2Core/src/datatype/Matrix44.h
- src/corelibs/U2Core/src/datatype/PFMatrix.cpp
- src/corelibs/U2Core/src/datatype/PFMatrix.h
- src/corelibs/U2Core/src/datatype/PWMatrix.cpp
- src/corelibs/U2Core/src/datatype/PWMatrix.h
- src/corelibs/U2Core/src/datatype/PhyTree.cpp
- src/corelibs/U2Core/src/datatype/PhyTree.h
- src/corelibs/U2Core/src/datatype/SMatrix.cpp
- src/corelibs/U2Core/src/datatype/SMatrix.h
- src/corelibs/U2Core/src/datatype/U2Alphabet.h
- src/corelibs/U2Core/src/datatype/U2Assembly.h
- src/corelibs/U2Core/src/datatype/U2Attribute.h
- src/corelibs/U2Core/src/datatype/U2CoreAttributes.cpp
- src/corelibs/U2Core/src/datatype/U2CoreAttributes.h
- src/corelibs/U2Core/src/datatype/U2Feature.h
- src/corelibs/U2Core/src/datatype/U2FeatureKeys.h
- src/corelibs/U2Core/src/datatype/U2FeatureType.cpp
- src/corelibs/U2Core/src/datatype/U2FeatureType.h
- src/corelibs/U2Core/src/datatype/U2IdTypes.h
- src/corelibs/U2Core/src/datatype/U2Identity.h
- src/corelibs/U2Core/src/datatype/U2Location.h
- src/corelibs/U2Core/src/datatype/U2Mod.cpp
- src/corelibs/U2Core/src/datatype/U2Mod.h
- src/corelibs/U2Core/src/datatype/U2Msa.cpp
- src/corelibs/U2Core/src/datatype/U2Msa.h
- src/corelibs/U2Core/src/datatype/U2Qualifier.cpp
- src/corelibs/U2Core/src/datatype/U2Qualifier.h
- src/corelibs/U2Core/src/datatype/U2Range.h
- src/corelibs/U2Core/src/datatype/U2RawData.h
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- src/corelibs/U2Core/src/util/SnpeffDictionary.cpp
- src/corelibs/U2Core/src/util/SnpeffDictionary.h
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- src/corelibs/U2Core/src/util/StrPackUtils.h
- src/corelibs/U2Core/src/util/SyncHttp.cpp
- src/corelibs/U2Core/src/util/SyncHttp.h
- src/corelibs/U2Core/src/util/TaskWatchdog.cpp
- src/corelibs/U2Core/src/util/TaskWatchdog.h
- src/corelibs/U2Core/src/util/TextUtils.cpp
- src/corelibs/U2Core/src/util/TextUtils.h
- src/corelibs/U2Core/src/util/U1AnnotationUtils.cpp
- src/corelibs/U2Core/src/util/U1AnnotationUtils.h
- src/corelibs/U2Core/src/util/U2AlphabetUtils.cpp
- src/corelibs/U2Core/src/util/U2AlphabetUtils.h
- src/corelibs/U2Core/src/util/U2AssemblyReadIterator.cpp
- src/corelibs/U2Core/src/util/U2AssemblyReadIterator.h
- src/corelibs/U2Core/src/util/U2AssemblyUtils.cpp
- src/corelibs/U2Core/src/util/U2AssemblyUtils.h
- src/corelibs/U2Core/src/util/U2AttributeUtils.cpp
- src/corelibs/U2Core/src/util/U2AttributeUtils.h
- src/corelibs/U2Core/src/util/U2Bits.cpp
- src/corelibs/U2Core/src/util/U2Bits.h
- src/corelibs/U2Core/src/util/U2DbiUpgrader.cpp
- src/corelibs/U2Core/src/util/U2DbiUpgrader.h
- src/corelibs/U2Core/src/util/U2FeatureUtils.cpp
- src/corelibs/U2Core/src/util/U2FeatureUtils.h
- src/corelibs/U2Core/src/util/U2ObjectTypeUtils.cpp
- src/corelibs/U2Core/src/util/U2ObjectTypeUtils.h
- src/corelibs/U2Core/src/util/U2OpStatusUtils.h
- src/corelibs/U2Core/src/util/U2SequenceUtils.cpp
- src/corelibs/U2Core/src/util/U2SequenceUtils.h
- src/corelibs/U2Core/src/util/U2VariationUtils.cpp
- src/corelibs/U2Core/src/util/U2VariationUtils.h
- src/corelibs/U2Core/src/util/VariationPropertiesUtils.h
- src/corelibs/U2Designer/src/BreakpointHitCountDialog.cpp
- src/corelibs/U2Designer/src/BreakpointHitCountDialog.h
- src/corelibs/U2Designer/src/DatasetWidget.cpp
- src/corelibs/U2Designer/src/DatasetWidget.h
- src/corelibs/U2Designer/src/DatasetsController.cpp
- src/corelibs/U2Designer/src/DatasetsController.h
- src/corelibs/U2Designer/src/DatasetsListWidget.cpp
- src/corelibs/U2Designer/src/DatasetsListWidget.h
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- src/corelibs/U2Designer/src/DbFolderItem.h
- src/corelibs/U2Designer/src/DbObjectItem.cpp
- src/corelibs/U2Designer/src/DbObjectItem.h
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- src/corelibs/U2Designer/src/DelegateEditors.h
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- src/corelibs/U2Designer/src/DesignerUtils.h
- src/corelibs/U2Designer/src/DirectoryItem.cpp
- src/corelibs/U2Designer/src/DirectoryItem.h
- src/corelibs/U2Designer/src/EditBreakpointLabelsDialog.cpp
- src/corelibs/U2Designer/src/EditBreakpointLabelsDialog.h
- src/corelibs/U2Designer/src/EditMarkerGroupDialog.cpp
- src/corelibs/U2Designer/src/EditMarkerGroupDialog.h
- src/corelibs/U2Designer/src/EstimationReporter.cpp
- src/corelibs/U2Designer/src/EstimationReporter.h
- src/corelibs/U2Designer/src/FileItem.cpp
- src/corelibs/U2Designer/src/FileItem.h
- src/corelibs/U2Designer/src/GrouperEditor.cpp
- src/corelibs/U2Designer/src/GrouperEditor.h
- src/corelibs/U2Designer/src/GrouperEditorWidget.cpp
- src/corelibs/U2Designer/src/GrouperEditorWidget.h
- src/corelibs/U2Designer/src/MarkerEditor.cpp
- src/corelibs/U2Designer/src/MarkerEditor.h
- src/corelibs/U2Designer/src/MarkerEditorWidget.cpp
- src/corelibs/U2Designer/src/MarkerEditorWidget.h
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- src/corelibs/U2Designer/src/NewBreakpointDialog.h
- src/corelibs/U2Designer/src/NewGrouperSlotDialog.cpp
- src/corelibs/U2Designer/src/NewGrouperSlotDialog.h
- src/corelibs/U2Designer/src/OutputFileDialog.cpp
- src/corelibs/U2Designer/src/OutputFileDialog.h
- src/corelibs/U2Designer/src/PropertyWidget.cpp
- src/corelibs/U2Designer/src/PropertyWidget.h
- src/corelibs/U2Designer/src/QDScheduler.cpp
- src/corelibs/U2Designer/src/QDScheduler.h
- src/corelibs/U2Designer/src/UrlItem.cpp
- src/corelibs/U2Designer/src/UrlItem.h
- src/corelibs/U2Designer/src/WorkflowGUIUtils.cpp
- src/corelibs/U2Designer/src/WorkflowGUIUtils.h
- src/corelibs/U2Designer/src/dashboard/Dashboard.cpp
- src/corelibs/U2Designer/src/dashboard/Dashboard.h
- src/corelibs/U2Designer/src/dashboard/DashboardInfo.cpp
- src/corelibs/U2Designer/src/dashboard/DashboardInfo.h
- src/corelibs/U2Designer/src/dashboard/DashboardInfoRegistry.cpp
- src/corelibs/U2Designer/src/dashboard/DashboardInfoRegistry.h
- src/corelibs/U2Designer/src/dashboard/DashboardTabPage.cpp
- src/corelibs/U2Designer/src/dashboard/DashboardTabPage.h
- src/corelibs/U2Designer/src/dashboard/DashboardWidget.cpp
- src/corelibs/U2Designer/src/dashboard/DashboardWidget.h
- src/corelibs/U2Designer/src/dashboard/DomUtils.cpp
- src/corelibs/U2Designer/src/dashboard/DomUtils.h
- src/corelibs/U2Designer/src/dashboard/ExternalToolsDashboardWidget.cpp
- src/corelibs/U2Designer/src/dashboard/ExternalToolsDashboardWidget.h
- src/corelibs/U2Designer/src/dashboard/NotificationsDashboardWidget.cpp
- src/corelibs/U2Designer/src/dashboard/NotificationsDashboardWidget.h
- src/corelibs/U2Designer/src/dashboard/OutputFilesDashboardWidget.cpp
- src/corelibs/U2Designer/src/dashboard/OutputFilesDashboardWidget.h
- src/corelibs/U2Designer/src/dashboard/ParametersDashboardWidget.cpp
- src/corelibs/U2Designer/src/dashboard/ParametersDashboardWidget.h
- src/corelibs/U2Designer/src/dashboard/RemoveDashboardsTask.cpp
- src/corelibs/U2Designer/src/dashboard/RemoveDashboardsTask.h
- src/corelibs/U2Designer/src/dashboard/ScanDashboardsDirTask.cpp
- src/corelibs/U2Designer/src/dashboard/ScanDashboardsDirTask.h
- src/corelibs/U2Designer/src/dashboard/StatisticsDashboardWidget.cpp
- src/corelibs/U2Designer/src/dashboard/StatisticsDashboardWidget.h
- src/corelibs/U2Designer/src/dashboard/StatusDashboardWidget.cpp
- src/corelibs/U2Designer/src/dashboard/StatusDashboardWidget.h
- src/corelibs/U2Designer/src/support/OutputDirectoryWidget.cpp
- src/corelibs/U2Designer/src/support/OutputDirectoryWidget.h
- src/corelibs/U2Designer/src/support/URLLineEdit.cpp
- src/corelibs/U2Designer/src/support/URLLineEdit.h
- src/corelibs/U2Designer/src/wizard/BowtieWidgetController.cpp
- src/corelibs/U2Designer/src/wizard/BowtieWidgetController.h
- src/corelibs/U2Designer/src/wizard/ElementSelectorController.cpp
- src/corelibs/U2Designer/src/wizard/ElementSelectorController.h
- src/corelibs/U2Designer/src/wizard/PairedDatasetsController.cpp
- src/corelibs/U2Designer/src/wizard/PairedDatasetsController.h
- src/corelibs/U2Designer/src/wizard/PropertyWizardController.cpp
- src/corelibs/U2Designer/src/wizard/PropertyWizardController.h
- src/corelibs/U2Designer/src/wizard/RadioController.cpp
- src/corelibs/U2Designer/src/wizard/RadioController.h
- src/corelibs/U2Designer/src/wizard/SelectorActors.cpp
- src/corelibs/U2Designer/src/wizard/SelectorActors.h
- src/corelibs/U2Designer/src/wizard/SettingsController.cpp
- src/corelibs/U2Designer/src/wizard/SettingsController.h
- src/corelibs/U2Designer/src/wizard/TophatSamplesWidgetController.cpp
- src/corelibs/U2Designer/src/wizard/TophatSamplesWidgetController.h
- src/corelibs/U2Designer/src/wizard/UrlAndDatasetWizardController.cpp
- src/corelibs/U2Designer/src/wizard/UrlAndDatasetWizardController.h
- src/corelibs/U2Designer/src/wizard/WDWizardPage.cpp
- src/corelibs/U2Designer/src/wizard/WDWizardPage.h
- src/corelibs/U2Designer/src/wizard/WidgetController.cpp
- src/corelibs/U2Designer/src/wizard/WidgetController.h
- src/corelibs/U2Designer/src/wizard/WizardController.cpp
- src/corelibs/U2Designer/src/wizard/WizardController.h
- src/corelibs/U2Designer/src/wizard/WizardPageController.cpp
- src/corelibs/U2Designer/src/wizard/WizardPageController.h
- src/corelibs/U2Formats/U2Formats.pro
- src/corelibs/U2Formats/src/ABIFormat.cpp
- src/corelibs/U2Formats/src/ABIFormat.h
- src/corelibs/U2Formats/src/ASNFormat.cpp
- src/corelibs/U2Formats/src/ASNFormat.h
- src/corelibs/U2Formats/src/AbstractVariationFormat.cpp
- src/corelibs/U2Formats/src/AbstractVariationFormat.h
- src/corelibs/U2Formats/src/BAMUtils.cpp
- src/corelibs/U2Formats/src/BAMUtils.h
- src/corelibs/U2Formats/src/BedFormat.cpp
- src/corelibs/U2Formats/src/BedFormat.h
- src/corelibs/U2Formats/src/ClustalWAlnFormat.cpp
- src/corelibs/U2Formats/src/ClustalWAlnFormat.h
- src/corelibs/U2Formats/src/ColumnDataParser.cpp
- src/corelibs/U2Formats/src/ColumnDataParser.h
- src/corelibs/U2Formats/src/DNAQualityIOUtils.cpp
- src/corelibs/U2Formats/src/DNAQualityIOUtils.h
- src/corelibs/U2Formats/src/Database.cpp
- src/corelibs/U2Formats/src/Database.h
- src/corelibs/U2Formats/src/DifferentialFormat.cpp
- src/corelibs/U2Formats/src/DifferentialFormat.h
- src/corelibs/U2Formats/src/DocumentFormatUtils.cpp
- src/corelibs/U2Formats/src/DocumentFormatUtils.h
- src/corelibs/U2Formats/src/EMBLGenbankAbstractDocument.cpp
- src/corelibs/U2Formats/src/EMBLGenbankAbstractDocument.h
- src/corelibs/U2Formats/src/EMBLPlainTextFormat.cpp
- src/corelibs/U2Formats/src/EMBLPlainTextFormat.h
- src/corelibs/U2Formats/src/FastaFormat.cpp
- src/corelibs/U2Formats/src/FastaFormat.h
- src/corelibs/U2Formats/src/FastqFormat.cpp
- src/corelibs/U2Formats/src/FastqFormat.h
- src/corelibs/U2Formats/src/FpkmTrackingFormat.cpp
- src/corelibs/U2Formats/src/FpkmTrackingFormat.h
- src/corelibs/U2Formats/src/GFFFormat.cpp
- src/corelibs/U2Formats/src/GFFFormat.h
- src/corelibs/U2Formats/src/GTFFormat.cpp
- src/corelibs/U2Formats/src/GTFFormat.h
- src/corelibs/U2Formats/src/GenbankLocationParser.cpp
- src/corelibs/U2Formats/src/GenbankLocationParser.h
- src/corelibs/U2Formats/src/GenbankPlainTextFormat.cpp
- src/corelibs/U2Formats/src/GenbankPlainTextFormat.h
- src/corelibs/U2Formats/src/IOLibUtils.h
- + src/corelibs/U2Formats/src/KrakenResultsPlainTextFormat.cpp
- + src/corelibs/U2Formats/src/KrakenResultsPlainTextFormat.h
- src/corelibs/U2Formats/src/MSFFormat.cpp
- src/corelibs/U2Formats/src/MSFFormat.h
- src/corelibs/U2Formats/src/MegaFormat.cpp
- src/corelibs/U2Formats/src/MegaFormat.h
- src/corelibs/U2Formats/src/NEXUSFormat.cpp
- src/corelibs/U2Formats/src/NEXUSFormat.h
- src/corelibs/U2Formats/src/NEXUSParser.h
- src/corelibs/U2Formats/src/NewickFormat.cpp
- src/corelibs/U2Formats/src/NewickFormat.h
- src/corelibs/U2Formats/src/PDBFormat.cpp
- src/corelibs/U2Formats/src/PDBFormat.h
- src/corelibs/U2Formats/src/PDWFormat.cpp
- src/corelibs/U2Formats/src/PDWFormat.h
- src/corelibs/U2Formats/src/PhylipFormat.cpp
- src/corelibs/U2Formats/src/PhylipFormat.h
- src/corelibs/U2Formats/src/PlainTextFormat.cpp
- src/corelibs/U2Formats/src/PlainTextFormat.h
- src/corelibs/U2Formats/src/RawDNASequenceFormat.cpp
- src/corelibs/U2Formats/src/RawDNASequenceFormat.h
- src/corelibs/U2Formats/src/SAMFormat.cpp
- src/corelibs/U2Formats/src/SAMFormat.h
- src/corelibs/U2Formats/src/SCFFormat.cpp
- src/corelibs/U2Formats/src/SCFFormat.h
- src/corelibs/U2Formats/src/SNPDatabaseUtils.cpp
- src/corelibs/U2Formats/src/SNPDatabaseUtils.h
- src/corelibs/U2Formats/src/SimpleSNPVariationFormat.cpp
- src/corelibs/U2Formats/src/SimpleSNPVariationFormat.h
- src/corelibs/U2Formats/src/StdResidueDictionary.cpp
- src/corelibs/U2Formats/src/StdResidueDictionary.h
- src/corelibs/U2Formats/src/StockholmFormat.cpp
- src/corelibs/U2Formats/src/StockholmFormat.h
- src/corelibs/U2Formats/src/StreamSequenceReader.cpp
- src/corelibs/U2Formats/src/StreamSequenceReader.h
- src/corelibs/U2Formats/src/StreamSequenceWriter.cpp
- src/corelibs/U2Formats/src/StreamSequenceWriter.h
- src/corelibs/U2Formats/src/SwissProtPlainTextFormat.cpp
- src/corelibs/U2Formats/src/SwissProtPlainTextFormat.h
- src/corelibs/U2Formats/src/TextDocumentFormat.cpp
- src/corelibs/U2Formats/src/TextDocumentFormat.h
- src/corelibs/U2Formats/src/VCF4VariationFormat.cpp
- src/corelibs/U2Formats/src/VCF4VariationFormat.h
- src/corelibs/U2Formats/src/VectorNtiSequenceFormat.cpp
- src/corelibs/U2Formats/src/VectorNtiSequenceFormat.h
- src/corelibs/U2Formats/src/ace/AceFormat.cpp
- src/corelibs/U2Formats/src/ace/AceFormat.h
- src/corelibs/U2Formats/src/ace/AceImportUtils.cpp
- src/corelibs/U2Formats/src/ace/AceImportUtils.h
- src/corelibs/U2Formats/src/ace/AceImporter.cpp
- src/corelibs/U2Formats/src/ace/AceImporter.h
- src/corelibs/U2Formats/src/ace/CloneAssemblyWithReferenceToDbiTask.cpp
- src/corelibs/U2Formats/src/ace/CloneAssemblyWithReferenceToDbiTask.h
- src/corelibs/U2Formats/src/ace/ConvertAceToSqliteTask.cpp
- src/corelibs/U2Formats/src/ace/ConvertAceToSqliteTask.h
- src/corelibs/U2Formats/src/apr/AprFormat.cpp
- src/corelibs/U2Formats/src/apr/AprFormat.h
- src/corelibs/U2Formats/src/apr/AprImporter.cpp
- src/corelibs/U2Formats/src/apr/AprImporter.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteAssemblyDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteAssemblyDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteAttributeDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteAttributeDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteBlobInputStream.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteBlobInputStream.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteBlobOutputStream.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteBlobOutputStream.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteFeatureDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteFeatureDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteModDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteModDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteMsaDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteMsaDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteObjectDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteObjectDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteObjectRelationsDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteObjectRelationsDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteSequenceDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteSequenceDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteUdrDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteUdrDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteVariantDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteVariantDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/assembly/MultiTableAssemblyAdapter.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/assembly/MultiTableAssemblyAdapter.h
- src/corelibs/U2Formats/src/sqlite_dbi/assembly/SingleTableAssemblyAdapter.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/assembly/SingleTableAssemblyAdapter.h
- src/corelibs/U2Formats/src/sqlite_dbi/util/SqliteUpgrader.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/util/SqliteUpgrader.h
- src/corelibs/U2Formats/src/sqlite_dbi/util/SqliteUpgrader_v13.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/util/SqliteUpgrader_v13.h
- src/corelibs/U2Formats/src/sqlite_dbi/util/SqliteUpgrader_v25.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/util/SqliteUpgrader_v25.h
- src/corelibs/U2Formats/src/sqlite_dbi/util/SqliteUpgrader_v50.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/util/SqliteUpgrader_v50.h
- src/corelibs/U2Formats/src/tasks/BgzipTask.cpp
- src/corelibs/U2Formats/src/tasks/BgzipTask.h
- src/corelibs/U2Formats/src/tasks/CalculateSequencesNumberTask.cpp
- src/corelibs/U2Formats/src/tasks/CalculateSequencesNumberTask.h
- src/corelibs/U2Formats/src/tasks/ConvertAssemblyToSamTask.cpp
- src/corelibs/U2Formats/src/tasks/ConvertAssemblyToSamTask.h
- src/corelibs/U2Formats/src/tasks/ConvertFileTask.cpp
- src/corelibs/U2Formats/src/tasks/ConvertFileTask.h
- src/corelibs/U2Formats/src/tasks/ConvertSnpeffVariationsToAnnotationsTask.cpp
- src/corelibs/U2Formats/src/tasks/ConvertSnpeffVariationsToAnnotationsTask.h
- src/corelibs/U2Formats/src/tasks/ExportTasks.cpp
- src/corelibs/U2Formats/src/tasks/ExportTasks.h
- src/corelibs/U2Formats/src/tasks/MergeBamTask.cpp
- src/corelibs/U2Formats/src/tasks/MergeBamTask.h
- src/corelibs/U2Formats/src/util/AssemblyAdapter.h
- src/corelibs/U2Formats/src/util/AssemblyPackAlgorithm.cpp
- src/corelibs/U2Formats/src/util/AssemblyPackAlgorithm.h
- src/corelibs/U2Formats/src/util/PairedFastqComparator.cpp
- src/corelibs/U2Formats/src/util/PairedFastqComparator.h
- src/corelibs/U2Formats/src/util/SnpeffInfoParser.cpp
- src/corelibs/U2Formats/src/util/SnpeffInfoParser.h
- src/corelibs/U2Formats/src/util/TabulatedFormatReader.cpp
- src/corelibs/U2Formats/src/util/TabulatedFormatReader.h
- src/corelibs/U2Gui/src/AppSettingsGUI.h
- src/corelibs/U2Gui/src/ComboBoxWithCheckBoxes.cpp
- src/corelibs/U2Gui/src/ComboBoxWithCheckBoxes.h
- src/corelibs/U2Gui/src/MainWindow.cpp
- src/corelibs/U2Gui/src/MainWindow.h
- src/corelibs/U2Gui/src/Notification.cpp
- src/corelibs/U2Gui/src/Notification.h
- src/corelibs/U2Gui/src/NotificationWidget.cpp
- src/corelibs/U2Gui/src/NotificationWidget.h
- src/corelibs/U2Gui/src/NotificationsTypes.h
- src/corelibs/U2Gui/src/ObjectViewModel.cpp
- src/corelibs/U2Gui/src/ObjectViewModel.h
- src/corelibs/U2Gui/src/ObjectViewTasks.cpp
- src/corelibs/U2Gui/src/ObjectViewTasks.h
- src/corelibs/U2Gui/src/OpenViewTask.cpp
- src/corelibs/U2Gui/src/OpenViewTask.h
- src/corelibs/U2Gui/src/PasteController.cpp
- src/corelibs/U2Gui/src/PasteController.h
- src/corelibs/U2Gui/src/PluginViewer.h
- src/corelibs/U2Gui/src/ProjectParsing.cpp
- src/corelibs/U2Gui/src/ProjectParsing.h
- src/corelibs/U2Gui/src/ProjectView.h
- src/corelibs/U2Gui/src/ReloadDocumentsTask.cpp
- src/corelibs/U2Gui/src/ReloadDocumentsTask.h
- src/corelibs/U2Gui/src/ToolsMenu.cpp
- src/corelibs/U2Gui/src/ToolsMenu.h
- src/corelibs/U2Gui/src/U2SavableWidget.cpp
- src/corelibs/U2Gui/src/U2SavableWidget.h
- src/corelibs/U2Gui/src/U2WidgetStateStorage.cpp
- src/corelibs/U2Gui/src/U2WidgetStateStorage.h
- src/corelibs/U2Gui/src/UnloadDocumentTask.cpp
- src/corelibs/U2Gui/src/UnloadDocumentTask.h
- src/corelibs/U2Gui/src/WelcomePageAction.cpp
- src/corelibs/U2Gui/src/WelcomePageAction.h
- src/corelibs/U2Gui/src/options_panel/GroupHeaderImageWidget.cpp
- src/corelibs/U2Gui/src/options_panel/GroupHeaderImageWidget.h
- src/corelibs/U2Gui/src/options_panel/GroupOptionsWidget.cpp
- src/corelibs/U2Gui/src/options_panel/GroupOptionsWidget.h
- src/corelibs/U2Gui/src/options_panel/OPWidgetFactory.cpp
- src/corelibs/U2Gui/src/options_panel/OPWidgetFactory.h
- src/corelibs/U2Gui/src/options_panel/OPWidgetFactoryRegistry.cpp
- src/corelibs/U2Gui/src/options_panel/OPWidgetFactoryRegistry.h
- src/corelibs/U2Gui/src/options_panel/OptionsPanel.cpp
- src/corelibs/U2Gui/src/options_panel/OptionsPanel.h
- src/corelibs/U2Gui/src/options_panel/OptionsPanelGroup.cpp
- src/corelibs/U2Gui/src/options_panel/OptionsPanelGroup.h
- src/corelibs/U2Gui/src/options_panel/OptionsPanelWidget.cpp
- src/corelibs/U2Gui/src/options_panel/OptionsPanelWidget.h
- src/corelibs/U2Gui/src/options_panel/PrimerLineEdit.cpp
- src/corelibs/U2Gui/src/options_panel/PrimerLineEdit.h
- src/corelibs/U2Gui/src/options_panel/ShowHideSubgroupWidget.cpp
- src/corelibs/U2Gui/src/options_panel/ShowHideSubgroupWidget.h
- src/corelibs/U2Gui/src/util/AddNewDocumentDialogController.h
- src/corelibs/U2Gui/src/util/AddNewDocumentDialogImpl.cpp
- src/corelibs/U2Gui/src/util/AddNewDocumentDialogImpl.h
- src/corelibs/U2Gui/src/util/AuthenticationDialog.cpp
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- src/corelibs/U2View/src/ov_msa/clipboard/SubalignmentToClipboardTask.h
- src/corelibs/U2View/src/ov_msa/exclude_list/MsaExcludeList.cpp
- src/corelibs/U2View/src/ov_msa/exclude_list/MsaExcludeList.h
- src/corelibs/U2View/src/ov_msa/export_consensus/MaExportConsensusTabFactory.cpp
- src/corelibs/U2View/src/ov_msa/export_consensus/MaExportConsensusTabFactory.h
- src/corelibs/U2View/src/ov_msa/export_consensus/MaExportConsensusWidget.cpp
- src/corelibs/U2View/src/ov_msa/export_consensus/MaExportConsensusWidget.h
- src/corelibs/U2View/src/ov_msa/export_image/MsaImageExportTask.cpp
- src/corelibs/U2View/src/ov_msa/export_image/MsaImageExportTask.h
- src/corelibs/U2View/src/ov_msa/find_pattern/FindPatternMsaTask.cpp
- src/corelibs/U2View/src/ov_msa/find_pattern/FindPatternMsaTask.h
- src/corelibs/U2View/src/ov_msa/find_pattern/FindPatternMsaWidget.cpp
- src/corelibs/U2View/src/ov_msa/find_pattern/FindPatternMsaWidget.h
- src/corelibs/U2View/src/ov_msa/find_pattern/FindPatternMsaWidgetFactory.cpp
- src/corelibs/U2View/src/ov_msa/find_pattern/FindPatternMsaWidgetFactory.h
- src/corelibs/U2View/src/ov_msa/find_pattern/FindPatternMsaWidgetSavableTab.cpp
- src/corelibs/U2View/src/ov_msa/find_pattern/FindPatternMsaWidgetSavableTab.h
- src/corelibs/U2View/src/ov_msa/general_tab/MaConsensusModeWidget.cpp
- src/corelibs/U2View/src/ov_msa/general_tab/MaConsensusModeWidget.h
- src/corelibs/U2View/src/ov_msa/general_tab/MsaGeneralTab.cpp
- src/corelibs/U2View/src/ov_msa/general_tab/MsaGeneralTab.h
- src/corelibs/U2View/src/ov_msa/general_tab/MsaGeneralTabFactory.cpp
- src/corelibs/U2View/src/ov_msa/general_tab/MsaGeneralTabFactory.h
- src/corelibs/U2View/src/ov_msa/highlighting/MsaHighlightingSavableTab.cpp
- src/corelibs/U2View/src/ov_msa/highlighting/MsaHighlightingSavableTab.h
- src/corelibs/U2View/src/ov_msa/highlighting/MsaHighlightingTab.cpp
- src/corelibs/U2View/src/ov_msa/highlighting/MsaHighlightingTab.h
- src/corelibs/U2View/src/ov_msa/highlighting/MsaHighlightingTabFactory.cpp
- src/corelibs/U2View/src/ov_msa/highlighting/MsaHighlightingTabFactory.h
- src/corelibs/U2View/src/ov_msa/highlighting/MsaSchemeComboBoxController.h
- src/corelibs/U2View/src/ov_msa/highlighting/MsaSchemesMenuBuilder.cpp
- src/corelibs/U2View/src/ov_msa/highlighting/MsaSchemesMenuBuilder.h
- src/corelibs/U2View/src/ov_msa/move_to_object/MoveToObjectMaController.cpp
- src/corelibs/U2View/src/ov_msa/move_to_object/MoveToObjectMaController.h
- src/corelibs/U2View/src/ov_msa/overview/MaEditorOverviewArea.cpp
- src/corelibs/U2View/src/ov_msa/overview/MaEditorOverviewArea.h
- src/corelibs/U2View/src/ov_msa/overview/MaGraphCalculationTask.cpp
- src/corelibs/U2View/src/ov_msa/overview/MaGraphCalculationTask.h
- src/corelibs/U2View/src/ov_msa/overview/MaGraphOverview.cpp
- src/corelibs/U2View/src/ov_msa/overview/MaGraphOverview.h
- src/corelibs/U2View/src/ov_msa/overview/MaOverview.cpp
- src/corelibs/U2View/src/ov_msa/overview/MaOverview.h
- src/corelibs/U2View/src/ov_msa/overview/MaOverviewContextMenu.cpp
- src/corelibs/U2View/src/ov_msa/overview/MaOverviewContextMenu.h
- src/corelibs/U2View/src/ov_msa/overview/MaOverviewImageExportTask.cpp
- src/corelibs/U2View/src/ov_msa/overview/MaOverviewImageExportTask.h
- src/corelibs/U2View/src/ov_msa/overview/MaSimpleOverview.cpp
- src/corelibs/U2View/src/ov_msa/overview/MaSimpleOverview.h
- src/corelibs/U2View/src/ov_msa/pairwise_alignment/PairAlign.cpp
- src/corelibs/U2View/src/ov_msa/pairwise_alignment/PairAlign.h
- src/corelibs/U2View/src/ov_msa/pairwise_alignment/PairAlignFactory.cpp
- src/corelibs/U2View/src/ov_msa/pairwise_alignment/PairAlignFactory.h
- src/corelibs/U2View/src/ov_msa/phy_tree/MsaEditorMultiTreeViewer.cpp
- src/corelibs/U2View/src/ov_msa/phy_tree/MsaEditorMultiTreeViewer.h
- src/corelibs/U2View/src/ov_msa/phy_tree/MsaEditorTreeManager.cpp
- src/corelibs/U2View/src/ov_msa/phy_tree/MsaEditorTreeManager.h
- src/corelibs/U2View/src/ov_msa/phy_tree/MsaEditorTreeTabArea.cpp
- src/corelibs/U2View/src/ov_msa/phy_tree/MsaEditorTreeTabArea.h
- src/corelibs/U2View/src/ov_msa/phy_tree/MsaEditorTreeViewer.cpp
- src/corelibs/U2View/src/ov_msa/phy_tree/MsaEditorTreeViewer.h
- src/corelibs/U2View/src/ov_msa/phy_tree_tab/TreeOptionsWidget.cpp
- src/corelibs/U2View/src/ov_msa/phy_tree_tab/TreeOptionsWidget.h
- src/corelibs/U2View/src/ov_msa/phy_tree_tab/TreeOptionsWidgetFactory.cpp
- src/corelibs/U2View/src/ov_msa/phy_tree_tab/TreeOptionsWidgetFactory.h
- src/corelibs/U2View/src/ov_msa/ref_seq_widget/RefSeqCommonWidget.cpp
- src/corelibs/U2View/src/ov_msa/ref_seq_widget/RefSeqCommonWidget.h
- src/corelibs/U2View/src/ov_msa/sort/MsaEditorSortSequencesWidget.cpp
- src/corelibs/U2View/src/ov_msa/sort/MsaEditorSortSequencesWidget.h
- src/corelibs/U2View/src/ov_msa/statistics/SeqStatisticsWidget.cpp
- src/corelibs/U2View/src/ov_msa/statistics/SeqStatisticsWidget.h
- src/corelibs/U2View/src/ov_msa/statistics/SeqStatisticsWidgetFactory.cpp
- src/corelibs/U2View/src/ov_msa/statistics/SeqStatisticsWidgetFactory.h
- + src/corelibs/U2View/src/ov_msa/statistics/SimilarityStatisticsSettings.h
- src/corelibs/U2View/src/ov_phyltree/TreeSettings.h
- src/corelibs/U2View/src/ov_phyltree/TreeViewer.cpp
- src/corelibs/U2View/src/ov_phyltree/TreeViewer.h
- src/corelibs/U2View/src/ov_phyltree/TreeViewerFactory.cpp
- src/corelibs/U2View/src/ov_phyltree/TreeViewerFactory.h
- src/corelibs/U2View/src/ov_phyltree/TreeViewerState.cpp
- src/corelibs/U2View/src/ov_phyltree/TreeViewerState.h
- src/corelibs/U2View/src/ov_phyltree/TreeViewerTasks.cpp
- src/corelibs/U2View/src/ov_phyltree/TreeViewerTasks.h
- src/corelibs/U2View/src/ov_phyltree/TreeViewerUtils.cpp
- src/corelibs/U2View/src/ov_phyltree/TreeViewerUtils.h
- src/corelibs/U2View/src/ov_phyltree/item/TvBranchItem.cpp
- src/corelibs/U2View/src/ov_phyltree/item/TvBranchItem.h
- src/corelibs/U2View/src/ov_phyltree/item/TvCircularBranchItem.cpp
- src/corelibs/U2View/src/ov_phyltree/item/TvCircularBranchItem.h
- src/corelibs/U2View/src/ov_phyltree/item/TvNodeItem.cpp
- src/corelibs/U2View/src/ov_phyltree/item/TvNodeItem.h
- src/corelibs/U2View/src/ov_phyltree/item/TvRectangularBranchItem.cpp
- src/corelibs/U2View/src/ov_phyltree/item/TvRectangularBranchItem.h
- src/corelibs/U2View/src/ov_phyltree/item/TvTextItem.cpp
- src/corelibs/U2View/src/ov_phyltree/item/TvTextItem.h
- src/corelibs/U2View/src/ov_phyltree/item/TvUnrootedBranchItem.cpp
- src/corelibs/U2View/src/ov_phyltree/item/TvUnrootedBranchItem.h
- src/corelibs/U2View/src/ov_phyltree/layout/TvCircularLayoutAlgorithm.cpp
- src/corelibs/U2View/src/ov_phyltree/layout/TvCircularLayoutAlgorithm.h
- src/corelibs/U2View/src/ov_phyltree/layout/TvRectangularLayoutAlgorithm.cpp
- src/corelibs/U2View/src/ov_phyltree/layout/TvRectangularLayoutAlgorithm.h
- src/corelibs/U2View/src/ov_phyltree/layout/TvUnrootedLayoutAlgorithm.cpp
- src/corelibs/U2View/src/ov_phyltree/layout/TvUnrootedLayoutAlgorithm.h
- src/corelibs/U2View/src/ov_sequence/ADVAnnotationCreation.cpp
- src/corelibs/U2View/src/ov_sequence/ADVAnnotationCreation.h
- src/corelibs/U2View/src/ov_sequence/ADVClipboard.cpp
- src/corelibs/U2View/src/ov_sequence/ADVClipboard.h
- src/corelibs/U2View/src/ov_sequence/ADVConstants.h
- src/corelibs/U2View/src/ov_sequence/ADVGraphModel.cpp
- src/corelibs/U2View/src/ov_sequence/ADVGraphModel.h
- src/corelibs/U2View/src/ov_sequence/ADVSequenceObjectContext.cpp
- src/corelibs/U2View/src/ov_sequence/ADVSequenceObjectContext.h
- src/corelibs/U2View/src/ov_sequence/ADVSequenceWidget.cpp
- src/corelibs/U2View/src/ov_sequence/ADVSequenceWidget.h
- src/corelibs/U2View/src/ov_sequence/ADVSingleSequenceWidget.cpp
- src/corelibs/U2View/src/ov_sequence/ADVSingleSequenceWidget.h
- src/corelibs/U2View/src/ov_sequence/ADVSplitWidget.h
- src/corelibs/U2View/src/ov_sequence/ADVSyncViewManager.cpp
- src/corelibs/U2View/src/ov_sequence/ADVSyncViewManager.h
- src/corelibs/U2View/src/ov_sequence/ADVUtils.cpp
- src/corelibs/U2View/src/ov_sequence/ADVUtils.h
- src/corelibs/U2View/src/ov_sequence/AnnotatedDNAView.cpp
- src/corelibs/U2View/src/ov_sequence/AnnotatedDNAView.h
- src/corelibs/U2View/src/ov_sequence/AnnotatedDNAViewFactory.cpp
- src/corelibs/U2View/src/ov_sequence/AnnotatedDNAViewFactory.h
- src/corelibs/U2View/src/ov_sequence/AnnotatedDNAViewState.cpp
- src/corelibs/U2View/src/ov_sequence/AnnotatedDNAViewState.h
- src/corelibs/U2View/src/ov_sequence/AnnotatedDNAViewTasks.cpp
- src/corelibs/U2View/src/ov_sequence/AnnotatedDNAViewTasks.h
- src/corelibs/U2View/src/ov_sequence/AnnotationsTreeView.cpp
- src/corelibs/U2View/src/ov_sequence/AnnotationsTreeView.h
- src/corelibs/U2View/src/ov_sequence/AutoAnnotationUtils.cpp
- src/corelibs/U2View/src/ov_sequence/AutoAnnotationUtils.h
- src/corelibs/U2View/src/ov_sequence/CreateRulerDialogController.cpp
- src/corelibs/U2View/src/ov_sequence/CreateRulerDialogController.h
- src/corelibs/U2View/src/ov_sequence/DetView.cpp
- src/corelibs/U2View/src/ov_sequence/DetView.h
- src/corelibs/U2View/src/ov_sequence/DetViewSequenceEditor.cpp
- src/corelibs/U2View/src/ov_sequence/DetViewSequenceEditor.h
- src/corelibs/U2View/src/ov_sequence/GSequenceGraphView.cpp
- src/corelibs/U2View/src/ov_sequence/GSequenceGraphView.h
- src/corelibs/U2View/src/ov_sequence/GSequenceGraphViewWithFactory.cpp
- src/corelibs/U2View/src/ov_sequence/GSequenceGraphViewWithFactory.h
- src/corelibs/U2View/src/ov_sequence/GSequenceLineView.cpp
- src/corelibs/U2View/src/ov_sequence/GSequenceLineView.h
- src/corelibs/U2View/src/ov_sequence/GSequenceLineViewAnnotated.cpp
- src/corelibs/U2View/src/ov_sequence/GSequenceLineViewAnnotated.h
- src/corelibs/U2View/src/ov_sequence/GraphLabelModel.cpp
- src/corelibs/U2View/src/ov_sequence/GraphLabelModel.h
- src/corelibs/U2View/src/ov_sequence/GraphMenu.cpp
- src/corelibs/U2View/src/ov_sequence/GraphMenu.h
- src/corelibs/U2View/src/ov_sequence/GraphSettingsDialog.cpp
- src/corelibs/U2View/src/ov_sequence/GraphSettingsDialog.h
- src/corelibs/U2View/src/ov_sequence/Overview.cpp
- src/corelibs/U2View/src/ov_sequence/Overview.h
- src/corelibs/U2View/src/ov_sequence/PanView.cpp
- src/corelibs/U2View/src/ov_sequence/PanView.h
- src/corelibs/U2View/src/ov_sequence/PanViewRows.cpp
- src/corelibs/U2View/src/ov_sequence/PanViewRows.h
- src/corelibs/U2View/src/ov_sequence/SaveGraphCutoffsDialogController.cpp
- src/corelibs/U2View/src/ov_sequence/SaveGraphCutoffsDialogController.h
- src/corelibs/U2View/src/ov_sequence/SearchQualifierDialog.cpp
- src/corelibs/U2View/src/ov_sequence/SearchQualifierDialog.h
- src/corelibs/U2View/src/ov_sequence/SequenceObjectContext.cpp
- src/corelibs/U2View/src/ov_sequence/SequenceObjectContext.h
- src/corelibs/U2View/src/ov_sequence/WindowStepSelectorWidget.cpp
- src/corelibs/U2View/src/ov_sequence/WindowStepSelectorWidget.h
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightSettings.cpp
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightSettings.h
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightTree.cpp
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightTree.h
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightTreeItem.cpp
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightTreeItem.h
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightWidget.cpp
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightWidget.h
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightWidgetFactory.cpp
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightWidgetFactory.h
- src/corelibs/U2View/src/ov_sequence/codon_table/CodonTable.cpp
- src/corelibs/U2View/src/ov_sequence/codon_table/CodonTable.h
- src/corelibs/U2View/src/ov_sequence/find_pattern/FindPatternTask.cpp
- src/corelibs/U2View/src/ov_sequence/find_pattern/FindPatternTask.h
- src/corelibs/U2View/src/ov_sequence/find_pattern/FindPatternWidget.cpp
- src/corelibs/U2View/src/ov_sequence/find_pattern/FindPatternWidget.h
- src/corelibs/U2View/src/ov_sequence/find_pattern/FindPatternWidgetFactory.cpp
- src/corelibs/U2View/src/ov_sequence/find_pattern/FindPatternWidgetFactory.h
- src/corelibs/U2View/src/ov_sequence/find_pattern/FindPatternWidgetSavableTab.cpp
- src/corelibs/U2View/src/ov_sequence/find_pattern/FindPatternWidgetSavableTab.h
- src/corelibs/U2View/src/ov_sequence/image_export/ExportImagePainter.h
- src/corelibs/U2View/src/ov_sequence/image_export/SequenceExportSettingsWidget.cpp
- src/corelibs/U2View/src/ov_sequence/image_export/SequenceExportSettingsWidget.h
- src/corelibs/U2View/src/ov_sequence/image_export/SequencePainter.cpp
- src/corelibs/U2View/src/ov_sequence/image_export/SequencePainter.h
- src/corelibs/U2View/src/ov_sequence/image_export/SingleSequenceImageExportController.cpp
- src/corelibs/U2View/src/ov_sequence/image_export/SingleSequenceImageExportController.h
- src/corelibs/U2View/src/ov_sequence/image_export/SingleSequenceImageExportTask.cpp
- src/corelibs/U2View/src/ov_sequence/image_export/SingleSequenceImageExportTask.h
- src/corelibs/U2View/src/ov_sequence/sequence_info/CharOccurTask.cpp
- src/corelibs/U2View/src/ov_sequence/sequence_info/CharOccurTask.h
- src/corelibs/U2View/src/ov_sequence/sequence_info/CodonOccurTask.cpp
- src/corelibs/U2View/src/ov_sequence/sequence_info/CodonOccurTask.h
- src/corelibs/U2View/src/ov_sequence/sequence_info/DNAStatisticsTask.cpp
- src/corelibs/U2View/src/ov_sequence/sequence_info/DNAStatisticsTask.h
- src/corelibs/U2View/src/ov_sequence/sequence_info/DinuclOccurTask.cpp
- src/corelibs/U2View/src/ov_sequence/sequence_info/DinuclOccurTask.h
- src/corelibs/U2View/src/ov_sequence/sequence_info/SequenceInfo.cpp
- src/corelibs/U2View/src/ov_sequence/sequence_info/SequenceInfo.h
- src/corelibs/U2View/src/ov_sequence/sequence_info/SequenceInfoFactory.cpp
- src/corelibs/U2View/src/ov_sequence/sequence_info/SequenceInfoFactory.h
- src/corelibs/U2View/src/ov_sequence/sequence_info/StatisticsCache.h
- src/corelibs/U2View/src/ov_sequence/view_rendering/DetViewMultiLineRenderer.cpp
- src/corelibs/U2View/src/ov_sequence/view_rendering/DetViewMultiLineRenderer.h
- src/corelibs/U2View/src/ov_sequence/view_rendering/DetViewRenderer.cpp
- src/corelibs/U2View/src/ov_sequence/view_rendering/DetViewRenderer.h
- src/corelibs/U2View/src/ov_sequence/view_rendering/DetViewSingleLineRenderer.cpp
- src/corelibs/U2View/src/ov_sequence/view_rendering/DetViewSingleLineRenderer.h
- src/corelibs/U2View/src/ov_sequence/view_rendering/PanViewRenderer.cpp
- src/corelibs/U2View/src/ov_sequence/view_rendering/PanViewRenderer.h
- src/corelibs/U2View/src/ov_sequence/view_rendering/SequenceViewAnnotatedRenderer.cpp
- src/corelibs/U2View/src/ov_sequence/view_rendering/SequenceViewAnnotatedRenderer.h
- src/corelibs/U2View/src/ov_sequence/view_rendering/SequenceViewRenderer.cpp
- src/corelibs/U2View/src/ov_sequence/view_rendering/SequenceViewRenderer.h
- src/corelibs/U2View/src/ov_text/SimpleTextObjectView.cpp
- src/corelibs/U2View/src/ov_text/SimpleTextObjectView.h
- src/corelibs/U2View/src/ov_text/SimpleTextObjectViewTasks.cpp
- src/corelibs/U2View/src/ov_text/SimpleTextObjectViewTasks.h
- src/corelibs/U2View/src/phyltree/BaseSettingsDialog.cpp
- src/corelibs/U2View/src/phyltree/BaseSettingsDialog.h
- src/corelibs/U2View/src/phyltree/CreatePhyTreeDialogController.cpp
- src/corelibs/U2View/src/phyltree/CreatePhyTreeDialogController.h
- src/corelibs/U2View/src/phyltree/CreatePhyTreeWidget.cpp
- src/corelibs/U2View/src/phyltree/CreatePhyTreeWidget.h
- src/corelibs/U2View/src/phyltree/PhyTreeDisplayOptionsWidget.cpp
- src/corelibs/U2View/src/phyltree/PhyTreeDisplayOptionsWidget.h
- src/corelibs/U2View/src/phyltree/TextSettingsDialog.cpp
- src/corelibs/U2View/src/phyltree/TextSettingsDialog.h
- src/corelibs/U2View/src/phyltree/TreeSettingsDialog.cpp
- src/corelibs/U2View/src/phyltree/TreeSettingsDialog.h
- src/corelibs/U2View/src/util_dna_assembly/BuildIndexDialog.cpp
- src/corelibs/U2View/src/util_dna_assembly/BuildIndexDialog.h
- src/corelibs/U2View/src/util_dna_assembly/ConvertAssemblyToSamDialog.cpp
- src/corelibs/U2View/src/util_dna_assembly/ConvertAssemblyToSamDialog.h
- src/corelibs/U2View/src/util_dna_assembly/DnaAssemblyDialog.cpp
- src/corelibs/U2View/src/util_dna_assembly/DnaAssemblyDialog.h
- src/corelibs/U2View/src/util_dna_assembly/DnaAssemblyGUIExtension.cpp
- src/corelibs/U2View/src/util_dna_assembly/DnaAssemblyGUIExtension.h
- src/corelibs/U2View/src/util_dna_assembly/DnaAssemblyUtils.cpp
- src/corelibs/U2View/src/util_dna_assembly/DnaAssemblyUtils.h
- src/corelibs/U2View/src/util_dna_assembly/GenomeAssemblyDialog.cpp
- src/corelibs/U2View/src/util_dna_assembly/GenomeAssemblyDialog.h
- src/corelibs/U2View/src/util_msa_align/AlignmentAlgorithmGUIExtension.cpp
- src/corelibs/U2View/src/util_msa_align/AlignmentAlgorithmGUIExtension.h
- src/corelibs/U2View/src/util_sec_struct_predict/SecStructDialog.cpp
- src/corelibs/U2View/src/util_sec_struct_predict/SecStructDialog.h
- src/corelibs/U2View/src/util_sec_struct_predict/SecStructPredictUtils.cpp
- src/corelibs/U2View/src/util_sec_struct_predict/SecStructPredictUtils.h
- src/corelibs/U2View/src/util_smith_waterman/SmithWatermanDialog.cpp
- src/corelibs/U2View/src/util_smith_waterman/SmithWatermanDialog.h
- src/corelibs/U2View/src/util_smith_waterman/SmithWatermanDialogImpl.h
- src/corelibs/U2View/src/util_smith_waterman/SubstMatrixDialog.cpp
- src/corelibs/U2View/src/util_smith_waterman/SubstMatrixDialog.h
- src/corelibs/U2View/transl/russian.ts
- + src/include/U2Core/CollectionUtils.h
- + src/include/U2Formats/KrakenResultsPlainTextFormat.h
- src/libs_3rdparty/QSpec/src/GTGlobals.cpp
- src/libs_3rdparty/QSpec/src/GTGlobals.h
- src/libs_3rdparty/QSpec/src/base_dialogs/ColorDialogFiller.cpp
- src/libs_3rdparty/QSpec/src/base_dialogs/ColorDialogFiller.h
- src/libs_3rdparty/QSpec/src/base_dialogs/DefaultDialogFiller.cpp
- src/libs_3rdparty/QSpec/src/base_dialogs/DefaultDialogFiller.h
- src/libs_3rdparty/QSpec/src/base_dialogs/FontDialogFiller.cpp
- src/libs_3rdparty/QSpec/src/base_dialogs/FontDialogFiller.h
- src/libs_3rdparty/QSpec/src/base_dialogs/MessageBoxFiller.cpp
- src/libs_3rdparty/QSpec/src/base_dialogs/MessageBoxFiller.h
- src/libs_3rdparty/QSpec/src/core/CustomScenario.cpp
- src/libs_3rdparty/QSpec/src/core/CustomScenario.h
- src/libs_3rdparty/QSpec/src/core/GUITestOpStatus.h
- src/libs_3rdparty/QSpec/src/core/MainThreadRunnable.cpp
- src/libs_3rdparty/QSpec/src/core/MainThreadRunnable.h
- src/libs_3rdparty/QSpec/src/core/MainThreadTimer.cpp
- src/libs_3rdparty/QSpec/src/core/MainThreadTimer.h
- src/libs_3rdparty/QSpec/src/drivers/GTKeyboardDriver.cpp
- src/libs_3rdparty/QSpec/src/drivers/GTKeyboardDriver.h
- src/libs_3rdparty/QSpec/src/drivers/GTKeyboardDriverLinux.cpp
- src/libs_3rdparty/QSpec/src/drivers/GTKeyboardDriverMac.cpp
- src/libs_3rdparty/QSpec/src/drivers/GTKeyboardDriverWindows.cpp
- src/libs_3rdparty/QSpec/src/drivers/GTMouseDriver.cpp
- src/libs_3rdparty/QSpec/src/drivers/GTMouseDriver.h
- src/libs_3rdparty/QSpec/src/drivers/GTMouseDriverLinux.cpp
- src/libs_3rdparty/QSpec/src/drivers/GTMouseDriverMac.cpp
- src/libs_3rdparty/QSpec/src/drivers/GTMouseDriverWindows.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTAction.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTAction.h
- src/libs_3rdparty/QSpec/src/primitives/GTCheckBox.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTCheckBox.h
- src/libs_3rdparty/QSpec/src/primitives/GTComboBox.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTComboBox.h
- src/libs_3rdparty/QSpec/src/primitives/GTDoubleSpinBox.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTGroupBox.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTGroupBox.h
- src/libs_3rdparty/QSpec/src/primitives/GTLabel.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTLabel.h
- src/libs_3rdparty/QSpec/src/primitives/GTLineEdit.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTLineEdit.h
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- src/libs_3rdparty/QSpec/src/primitives/GTListWidget.h
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- src/plugins/biostruct3d_view/src/GraphicUtils.h
- src/plugins/biostruct3d_view/src/MolecularSurfaceRenderer.cpp
- src/plugins/biostruct3d_view/src/MolecularSurfaceRenderer.h
- src/plugins/biostruct3d_view/src/SelectModelsDialog.cpp
- src/plugins/biostruct3d_view/src/SelectModelsDialog.h
- src/plugins/biostruct3d_view/src/SettingsDialog.cpp
- src/plugins/biostruct3d_view/src/SettingsDialog.h
- src/plugins/biostruct3d_view/src/StructuralAlignmentDialog.cpp
- src/plugins/biostruct3d_view/src/StructuralAlignmentDialog.h
- src/plugins/biostruct3d_view/src/TubeGLRenderer.cpp
- src/plugins/biostruct3d_view/src/TubeGLRenderer.h
- src/plugins/biostruct3d_view/src/VanDerWaalsGLRenderer.cpp
- src/plugins/biostruct3d_view/src/VanDerWaalsGLRenderer.h
- src/plugins/biostruct3d_view/src/WormsGLRenderer.cpp
- src/plugins/biostruct3d_view/src/WormsGLRenderer.h
- src/plugins/chroma_view/src/ChromaViewPlugin.cpp
- src/plugins/chroma_view/src/ChromaViewPlugin.h
- src/plugins/chroma_view/src/ChromatogramView.cpp
- src/plugins/chroma_view/src/ChromatogramView.h
- src/plugins/circular_view/src/CircularItems.cpp
- src/plugins/circular_view/src/CircularItems.h
- src/plugins/circular_view/src/CircularView.cpp
- src/plugins/circular_view/src/CircularView.h
- src/plugins/circular_view/src/CircularViewImageExportTask.cpp
- src/plugins/circular_view/src/CircularViewImageExportTask.h
- src/plugins/circular_view/src/CircularViewPlugin.cpp
- src/plugins/circular_view/src/CircularViewPlugin.h
- src/plugins/circular_view/src/CircularViewSettingsWidget.cpp
- src/plugins/circular_view/src/CircularViewSettingsWidget.h
- src/plugins/circular_view/src/CircularViewSettingsWidget.ui
- src/plugins/circular_view/src/CircularViewSettingsWidgetFactory.cpp
- src/plugins/circular_view/src/CircularViewSettingsWidgetFactory.h
- src/plugins/circular_view/src/CircularViewSplitter.cpp
- src/plugins/circular_view/src/CircularViewSplitter.h
- src/plugins/circular_view/src/RestrictionMapWidget.cpp
- src/plugins/circular_view/src/RestrictionMapWidget.h
- src/plugins/circular_view/src/SetSequenceOriginDialog.cpp
- src/plugins/circular_view/src/SetSequenceOriginDialog.h
- src/plugins/circular_view/src/ShiftSequenceStartTask.cpp
- src/plugins/circular_view/src/ShiftSequenceStartTask.h
- src/plugins/dbi_bam/src/Alignment.cpp
- src/plugins/dbi_bam/src/Alignment.h
- src/plugins/dbi_bam/src/BAMDbiPlugin.cpp
- src/plugins/dbi_bam/src/BAMDbiPlugin.h
- src/plugins/dbi_bam/src/BAMFormat.cpp
- src/plugins/dbi_bam/src/BAMFormat.h
- src/plugins/dbi_bam/src/BaiReader.cpp
- src/plugins/dbi_bam/src/BaiReader.h
- src/plugins/dbi_bam/src/BaiWriter.cpp
- src/plugins/dbi_bam/src/BaiWriter.h
- src/plugins/dbi_bam/src/BgzfReader.cpp
- src/plugins/dbi_bam/src/BgzfReader.h
- src/plugins/dbi_bam/src/BgzfWriter.cpp
- src/plugins/dbi_bam/src/BgzfWriter.h
- src/plugins/dbi_bam/src/CancelledException.cpp
- src/plugins/dbi_bam/src/CancelledException.h
- src/plugins/dbi_bam/src/CigarValidator.cpp
- src/plugins/dbi_bam/src/CigarValidator.h
- src/plugins/dbi_bam/src/ConvertToSQLiteDialog.cpp
- src/plugins/dbi_bam/src/ConvertToSQLiteDialog.h
- src/plugins/dbi_bam/src/ConvertToSQLiteTask.cpp
- src/plugins/dbi_bam/src/ConvertToSQLiteTask.h
- src/plugins/dbi_bam/src/Dbi.cpp
- src/plugins/dbi_bam/src/Dbi.h
- src/plugins/dbi_bam/src/Exception.cpp
- src/plugins/dbi_bam/src/Exception.h
- src/plugins/dbi_bam/src/Header.cpp
- src/plugins/dbi_bam/src/Header.h
- src/plugins/dbi_bam/src/IOException.cpp
- src/plugins/dbi_bam/src/IOException.h
- src/plugins/dbi_bam/src/Index.cpp
- src/plugins/dbi_bam/src/Index.h
- src/plugins/dbi_bam/src/InvalidFormatException.cpp
- src/plugins/dbi_bam/src/InvalidFormatException.h
- src/plugins/dbi_bam/src/LoadBamInfoTask.cpp
- src/plugins/dbi_bam/src/LoadBamInfoTask.h
- src/plugins/dbi_bam/src/PrepareToImportTask.cpp
- src/plugins/dbi_bam/src/PrepareToImportTask.h
- src/plugins/dbi_bam/src/Reader.cpp
- src/plugins/dbi_bam/src/Reader.h
- src/plugins/dbi_bam/src/SamReader.cpp
- src/plugins/dbi_bam/src/SamReader.h
- src/plugins/dbi_bam/src/SamtoolsBasedDbi.cpp
- src/plugins/dbi_bam/src/SamtoolsBasedDbi.h
- src/plugins/dbi_bam/src/VirtualOffset.cpp
- src/plugins/dbi_bam/src/VirtualOffset.h
- src/plugins/dna_export/src/CSVColumnConfiguration.h
- src/plugins/dna_export/src/CSVColumnConfigurationDialog.cpp
- src/plugins/dna_export/src/CSVColumnConfigurationDialog.h
- src/plugins/dna_export/src/DNAExportPlugin.cpp
- src/plugins/dna_export/src/DNAExportPlugin.h
- src/plugins/dna_export/src/DNAExportPluginTests.cpp
- src/plugins/dna_export/src/DNAExportPluginTests.h
- src/plugins/dna_export/src/DNASequenceGenerator.cpp
- src/plugins/dna_export/src/DNASequenceGenerator.h
- src/plugins/dna_export/src/DNASequenceGeneratorDialog.cpp
- src/plugins/dna_export/src/DNASequenceGeneratorDialog.h
- src/plugins/dna_export/src/ExportAlignmentViewItems.cpp
- src/plugins/dna_export/src/ExportAlignmentViewItems.h
- src/plugins/dna_export/src/ExportBlastResultDialog.cpp
- src/plugins/dna_export/src/ExportBlastResultDialog.h
- src/plugins/dna_export/src/ExportChromatogramDialog.cpp
- src/plugins/dna_export/src/ExportChromatogramDialog.h
- src/plugins/dna_export/src/ExportMSA2MSADialog.cpp
- src/plugins/dna_export/src/ExportMSA2MSADialog.h
- src/plugins/dna_export/src/ExportMSA2SequencesDialog.cpp
- src/plugins/dna_export/src/ExportMSA2SequencesDialog.h
- src/plugins/dna_export/src/ExportProjectViewItems.cpp
- src/plugins/dna_export/src/ExportProjectViewItems.h
- src/plugins/dna_export/src/ExportQualityScoresTask.cpp
- src/plugins/dna_export/src/ExportQualityScoresTask.h
- src/plugins/dna_export/src/ExportQualityScoresWorker.cpp
- src/plugins/dna_export/src/ExportQualityScoresWorker.h
- src/plugins/dna_export/src/ExportSelectedSeqRegionsTask.cpp
- src/plugins/dna_export/src/ExportSelectedSeqRegionsTask.h
- src/plugins/dna_export/src/ExportSequenceTask.cpp
- src/plugins/dna_export/src/ExportSequenceTask.h
- src/plugins/dna_export/src/ExportSequenceViewItems.cpp
- src/plugins/dna_export/src/ExportSequenceViewItems.h
- src/plugins/dna_export/src/ExportSequences2MSADialog.cpp
- src/plugins/dna_export/src/ExportSequences2MSADialog.h
- src/plugins/dna_export/src/ExportSequencesDialog.cpp
- src/plugins/dna_export/src/ExportSequencesDialog.h
- src/plugins/dna_export/src/ExportUtils.cpp
- src/plugins/dna_export/src/ExportUtils.h
- src/plugins/dna_export/src/GenerateDNAWorker.cpp
- src/plugins/dna_export/src/GenerateDNAWorker.h
- src/plugins/dna_export/src/GetSequenceByIdDialog.cpp
- src/plugins/dna_export/src/GetSequenceByIdDialog.h
- src/plugins/dna_export/src/ImportAnnotationsFromCSVDialog.cpp
- src/plugins/dna_export/src/ImportAnnotationsFromCSVDialog.h
- src/plugins/dna_export/src/ImportAnnotationsFromCSVTask.cpp
- src/plugins/dna_export/src/ImportAnnotationsFromCSVTask.h
- src/plugins/dna_export/src/ImportQualityScoresTask.cpp
- src/plugins/dna_export/src/ImportQualityScoresTask.h
- src/plugins/dna_export/src/ImportQualityScoresWorker.cpp
- src/plugins/dna_export/src/ImportQualityScoresWorker.h
- src/plugins/dna_export/src/McaEditorContext.cpp
- src/plugins/dna_export/src/McaEditorContext.h
- src/plugins/dna_export/src/dialogs/ExportMca2MsaDialog.cpp
- src/plugins/dna_export/src/dialogs/ExportMca2MsaDialog.h
- src/plugins/dna_export/src/dialogs/SaveSelectedSequenceFromMSADialogController.cpp
- src/plugins/dna_export/src/dialogs/SaveSelectedSequenceFromMSADialogController.h
- src/plugins/dna_export/src/tasks/ConvertMca2MsaTask.cpp
- src/plugins/dna_export/src/tasks/ConvertMca2MsaTask.h
- src/plugins/dna_export/src/tasks/ExportMca2MsaTask.cpp
- src/plugins/dna_export/src/tasks/ExportMca2MsaTask.h
- src/plugins/dna_flexibility/src/DNAFlexDialog.cpp
- src/plugins/dna_flexibility/src/DNAFlexDialog.h
- src/plugins/dna_flexibility/src/DNAFlexGraph.cpp
- src/plugins/dna_flexibility/src/DNAFlexGraph.h
- src/plugins/dna_flexibility/src/DNAFlexGraphAlgorithm.cpp
- src/plugins/dna_flexibility/src/DNAFlexGraphAlgorithm.h
- src/plugins/dna_flexibility/src/DNAFlexPlugin.cpp
- src/plugins/dna_flexibility/src/DNAFlexPlugin.h
- src/plugins/dna_flexibility/src/DNAFlexTask.cpp
- src/plugins/dna_flexibility/src/DNAFlexTask.h
- src/plugins/dna_flexibility/src/FindHighFlexRegions.cpp
- src/plugins/dna_flexibility/src/FindHighFlexRegions.h
- src/plugins/dna_flexibility/src/FindHighFlexRegionsAlgorithm.cpp
- src/plugins/dna_flexibility/src/FindHighFlexRegionsAlgorithm.h
- src/plugins/dna_flexibility/src/HighFlexResult.h
- src/plugins/dna_flexibility/src/HighFlexSettings.cpp
- src/plugins/dna_flexibility/src/HighFlexSettings.h
- src/plugins/dna_graphpack/src/BaseContentGraph.cpp
- src/plugins/dna_graphpack/src/BaseContentGraph.h
- src/plugins/dna_graphpack/src/CumulativeSkew.cpp
- src/plugins/dna_graphpack/src/CumulativeSkew.h
- src/plugins/dna_graphpack/src/DNAGraphPackPlugin.cpp
- src/plugins/dna_graphpack/src/DNAGraphPackPlugin.h
- src/plugins/dna_graphpack/src/DeviationGraph.cpp
- src/plugins/dna_graphpack/src/DeviationGraph.h
- src/plugins/dna_graphpack/src/EntropyAlgorithm.cpp
- src/plugins/dna_graphpack/src/EntropyAlgorithm.h
- src/plugins/dna_graphpack/src/GCFramePlot.cpp
- src/plugins/dna_graphpack/src/GCFramePlot.h
- src/plugins/dna_graphpack/src/KarlinSignatureDifferenceGraph.cpp
- src/plugins/dna_graphpack/src/KarlinSignatureDifferenceGraph.h
- src/plugins/dna_stat/src/DNAStatMSAProfileDialog.cpp
- src/plugins/dna_stat/src/DNAStatMSAProfileDialog.h
- src/plugins/dna_stat/src/DNAStatPlugin.cpp
- src/plugins/dna_stat/src/DNAStatPlugin.h
- src/plugins/dna_stat/src/DistanceMatrixMSAProfileDialog.cpp
- src/plugins/dna_stat/src/DistanceMatrixMSAProfileDialog.h
- src/plugins/dotplot/src/DotPlotClasses.cpp
- src/plugins/dotplot/src/DotPlotClasses.h
- src/plugins/dotplot/src/DotPlotDialog.cpp
- src/plugins/dotplot/src/DotPlotDialog.h
- src/plugins/dotplot/src/DotPlotDialog.ui
- src/plugins/dotplot/src/DotPlotFilesDialog.cpp
- src/plugins/dotplot/src/DotPlotFilesDialog.h
- src/plugins/dotplot/src/DotPlotFilterDialog.cpp
- src/plugins/dotplot/src/DotPlotFilterDialog.h
- src/plugins/dotplot/src/DotPlotImageExportTask.cpp
- src/plugins/dotplot/src/DotPlotImageExportTask.h
- src/plugins/dotplot/src/DotPlotPlugin.cpp
- src/plugins/dotplot/src/DotPlotPlugin.h
- src/plugins/dotplot/src/DotPlotSplitter.cpp
- src/plugins/dotplot/src/DotPlotSplitter.h
- src/plugins/dotplot/src/DotPlotTasks.cpp
- src/plugins/dotplot/src/DotPlotTasks.h
- src/plugins/dotplot/src/DotPlotWidget.cpp
- src/plugins/dotplot/src/DotPlotWidget.h
- src/plugins/enzymes/enzymes.pro
- src/plugins/enzymes/src/CloningUtilTasks.cpp
- src/plugins/enzymes/src/CloningUtilTasks.h
- src/plugins/enzymes/src/ConstructMoleculeDialog.cpp
- src/plugins/enzymes/src/ConstructMoleculeDialog.h
- src/plugins/enzymes/src/CreateFragmentDialog.cpp
- src/plugins/enzymes/src/CreateFragmentDialog.h
- src/plugins/enzymes/src/DNAFragment.cpp
- src/plugins/enzymes/src/DNAFragment.h
- src/plugins/enzymes/src/DigestSequenceDialog.cpp
- src/plugins/enzymes/src/DigestSequenceDialog.h
- src/plugins/enzymes/src/EditFragmentDialog.cpp
- src/plugins/enzymes/src/EditFragmentDialog.h
- src/plugins/enzymes/src/EnzymesIO.cpp
- src/plugins/enzymes/src/EnzymesIO.h
- src/plugins/enzymes/src/EnzymesPlugin.cpp
- src/plugins/enzymes/src/EnzymesPlugin.h
- src/plugins/enzymes/src/EnzymesQuery.cpp
- src/plugins/enzymes/src/EnzymesQuery.h
- − src/plugins/enzymes/src/EnzymesSelectorDialog.ui
- − src/plugins/enzymes/src/EnzymesSelectorWidget.ui
- src/plugins/enzymes/src/EnzymesTests.cpp
- src/plugins/enzymes/src/EnzymesTests.h
- src/plugins/enzymes/src/FindEnzymesAlgorithm.h
- − src/plugins/enzymes/src/FindEnzymesDialog.ui
- src/plugins/enzymes/src/FindEnzymesTask.cpp
- src/plugins/enzymes/src/FindEnzymesTask.h
- + src/plugins/enzymes/src/enzymes_dialog/EnzymeGroupTreeItem.cpp
- + src/plugins/enzymes/src/enzymes_dialog/EnzymeGroupTreeItem.h
- + src/plugins/enzymes/src/enzymes_dialog/EnzymeTreeItem.cpp
- + src/plugins/enzymes/src/enzymes_dialog/EnzymeTreeItem.h
- src/plugins/enzymes/src/FindEnzymesDialog.cpp → src/plugins/enzymes/src/enzymes_dialog/EnzymesSelectorWidget.cpp
- src/plugins/enzymes/src/FindEnzymesDialog.h → src/plugins/enzymes/src/enzymes_dialog/EnzymesSelectorWidget.h
- + src/plugins/enzymes/src/enzymes_dialog/EnzymesSelectorWidget.ui
- + src/plugins/enzymes/src/enzymes_dialog/FindEnzymesDialogBase.cpp
- + src/plugins/enzymes/src/enzymes_dialog/FindEnzymesDialogBase.h
- + src/plugins/enzymes/src/enzymes_dialog/FindEnzymesDialogQueryDesigner.cpp
- + src/plugins/enzymes/src/enzymes_dialog/FindEnzymesDialogQueryDesigner.h
- + src/plugins/enzymes/src/enzymes_dialog/FindEnzymesDialogSequenceView.cpp
- + src/plugins/enzymes/src/enzymes_dialog/FindEnzymesDialogSequenceView.h
- + src/plugins/enzymes/src/enzymes_dialog/RegionSelectorWithExclude.cpp
- + src/plugins/enzymes/src/enzymes_dialog/RegionSelectorWithExclude.h
- + src/plugins/enzymes/src/enzymes_dialog/ResultsCountFilter.cpp
- + src/plugins/enzymes/src/enzymes_dialog/ResultsCountFilter.h
- + src/plugins/enzymes/src/enzymes_dialog/ResultsCountFilter.ui
- src/plugins/enzymes/src/insert/InsertEnzymeDialog.cpp
- src/plugins/enzymes/src/insert/InsertEnzymeDialog.h
- src/plugins/enzymes/src/insert/InsertEnzymeWidget.cpp
- src/plugins/enzymes/src/insert/InsertEnzymeWidget.h
- src/plugins/enzymes/transl/russian.ts
- src/plugins/external_tool_support/external_tool_support.pro
- src/plugins/external_tool_support/src/ETSProjectViewItemsController.cpp
- src/plugins/external_tool_support/src/ETSProjectViewItemsController.h
- src/plugins/external_tool_support/src/ExternalToolManager.cpp
- src/plugins/external_tool_support/src/ExternalToolManager.h
- src/plugins/external_tool_support/src/ExternalToolSupportL10N.h
- src/plugins/external_tool_support/src/ExternalToolSupportPlugin.cpp
- src/plugins/external_tool_support/src/ExternalToolSupportPlugin.h
- src/plugins/external_tool_support/src/ExternalToolSupportSettings.cpp
- src/plugins/external_tool_support/src/ExternalToolSupportSettings.h
- src/plugins/external_tool_support/src/ExternalToolSupportSettingsController.cpp
- src/plugins/external_tool_support/src/ExternalToolSupportSettingsController.h
- src/plugins/external_tool_support/src/RnaSeqCommon.cpp
- src/plugins/external_tool_support/src/RnaSeqCommon.h
- src/plugins/external_tool_support/src/RunnerTool.cpp
- src/plugins/external_tool_support/src/RunnerTool.h
- src/plugins/external_tool_support/src/TaskLocalStorage.cpp
- src/plugins/external_tool_support/src/TaskLocalStorage.h
- src/plugins/external_tool_support/src/bedtools/BedToolsWorkersLibrary.cpp
- src/plugins/external_tool_support/src/bedtools/BedToolsWorkersLibrary.h
- src/plugins/external_tool_support/src/bedtools/BedtoolsIntersectTask.cpp
- src/plugins/external_tool_support/src/bedtools/BedtoolsIntersectTask.h
- src/plugins/external_tool_support/src/bedtools/BedtoolsSupport.cpp
- src/plugins/external_tool_support/src/bedtools/BedtoolsSupport.h
- src/plugins/external_tool_support/src/bedtools/BedtoolsSupportTask.cpp
- src/plugins/external_tool_support/src/bedtools/BedtoolsSupportTask.h
- src/plugins/external_tool_support/src/bigWigTools/BedGraphToBigWigTask.cpp
- src/plugins/external_tool_support/src/bigWigTools/BedGraphToBigWigTask.h
- src/plugins/external_tool_support/src/bigWigTools/BedGraphToBigWigWorker.cpp
- src/plugins/external_tool_support/src/bigWigTools/BedGraphToBigWigWorker.h
- src/plugins/external_tool_support/src/bigWigTools/BigWigSupport.cpp
- src/plugins/external_tool_support/src/bigWigTools/BigWigSupport.h
- src/plugins/external_tool_support/src/blast/AlignToReferenceBlastDialog.cpp
- src/plugins/external_tool_support/src/blast/AlignToReferenceBlastDialog.h
- src/plugins/external_tool_support/src/blast/AlignToReferenceBlastWorker.cpp
- src/plugins/external_tool_support/src/blast/AlignToReferenceBlastWorker.h
- src/plugins/external_tool_support/src/blast/BlastCommonTask.cpp
- src/plugins/external_tool_support/src/blast/BlastCommonTask.h
- src/plugins/external_tool_support/src/blast/BlastDBCmdDialog.cpp
- src/plugins/external_tool_support/src/blast/BlastDBCmdDialog.h
- src/plugins/external_tool_support/src/blast/BlastDBCmdTask.cpp
- src/plugins/external_tool_support/src/blast/BlastDBCmdTask.h
- src/plugins/external_tool_support/src/blast/BlastDBSelectorWidgetController.cpp
- src/plugins/external_tool_support/src/blast/BlastDBSelectorWidgetController.h
- src/plugins/external_tool_support/src/blast/BlastNTask.cpp
- src/plugins/external_tool_support/src/blast/BlastNTask.h
- src/plugins/external_tool_support/src/blast/BlastPTask.cpp
- src/plugins/external_tool_support/src/blast/BlastPTask.h
- src/plugins/external_tool_support/src/blast/BlastRunCommonDialog.cpp
- src/plugins/external_tool_support/src/blast/BlastRunCommonDialog.h
- src/plugins/external_tool_support/src/blast/BlastRunDialog.cpp
- src/plugins/external_tool_support/src/blast/BlastRunDialog.h
- src/plugins/external_tool_support/src/blast/BlastSupport.cpp
- src/plugins/external_tool_support/src/blast/BlastSupport.h
- src/plugins/external_tool_support/src/blast/BlastTaskSettings.cpp
- src/plugins/external_tool_support/src/blast/BlastTaskSettings.h
- src/plugins/external_tool_support/src/blast/BlastWorker.cpp
- src/plugins/external_tool_support/src/blast/BlastWorker.h
- src/plugins/external_tool_support/src/blast/BlastXTask.cpp
- src/plugins/external_tool_support/src/blast/BlastXTask.h
- src/plugins/external_tool_support/src/blast/MakeBlastDbDialog.cpp
- src/plugins/external_tool_support/src/blast/MakeBlastDbDialog.h
- src/plugins/external_tool_support/src/blast/MakeBlastDbTask.cpp
- src/plugins/external_tool_support/src/blast/MakeBlastDbTask.h
- src/plugins/external_tool_support/src/blast/PrepareInputFastaFilesTask.cpp
- src/plugins/external_tool_support/src/blast/PrepareInputFastaFilesTask.h
- src/plugins/external_tool_support/src/blast/RPSBlastTask.cpp
- src/plugins/external_tool_support/src/blast/RPSBlastTask.h
- src/plugins/external_tool_support/src/blast/TBlastNTask.cpp
- src/plugins/external_tool_support/src/blast/TBlastNTask.h
- src/plugins/external_tool_support/src/blast/TBlastXTask.cpp
- src/plugins/external_tool_support/src/blast/TBlastXTask.h
- src/plugins/external_tool_support/src/blast/align_worker_subtasks/BlastAlignToReferenceTask.cpp
- src/plugins/external_tool_support/src/blast/align_worker_subtasks/BlastAlignToReferenceTask.h
- src/plugins/external_tool_support/src/blast/align_worker_subtasks/ComposeResultSubtask.cpp
- src/plugins/external_tool_support/src/blast/align_worker_subtasks/ComposeResultSubtask.h
- src/plugins/external_tool_support/src/blast/align_worker_subtasks/MakeBlastDbAlignerSubtask.cpp
- src/plugins/external_tool_support/src/blast/align_worker_subtasks/MakeBlastDbAlignerSubtask.h
- src/plugins/external_tool_support/src/blast/align_worker_subtasks/PrepareReferenceSequenceTask.cpp
- src/plugins/external_tool_support/src/blast/align_worker_subtasks/PrepareReferenceSequenceTask.h
- src/plugins/external_tool_support/src/blast/align_worker_subtasks/RemoveGapsFromSequenceTask.cpp
- src/plugins/external_tool_support/src/blast/align_worker_subtasks/RemoveGapsFromSequenceTask.h
- src/plugins/external_tool_support/src/bowtie/BowtieSettingsWidget.cpp
- src/plugins/external_tool_support/src/bowtie/BowtieSettingsWidget.h
- src/plugins/external_tool_support/src/bowtie/BowtieSupport.cpp
- src/plugins/external_tool_support/src/bowtie/BowtieSupport.h
- src/plugins/external_tool_support/src/bowtie/BowtieTask.cpp
- src/plugins/external_tool_support/src/bowtie/BowtieTask.h
- src/plugins/external_tool_support/src/bowtie/BowtieWorker.cpp
- src/plugins/external_tool_support/src/bowtie/BowtieWorker.h
- src/plugins/external_tool_support/src/bowtie/bowtie_tests/bowtieTests.cpp
- src/plugins/external_tool_support/src/bowtie/bowtie_tests/bowtieTests.h
- src/plugins/external_tool_support/src/bowtie2/Bowtie2SettingsWidget.cpp
- src/plugins/external_tool_support/src/bowtie2/Bowtie2SettingsWidget.h
- src/plugins/external_tool_support/src/bowtie2/Bowtie2Support.cpp
- src/plugins/external_tool_support/src/bowtie2/Bowtie2Support.h
- src/plugins/external_tool_support/src/bowtie2/Bowtie2Task.cpp
- src/plugins/external_tool_support/src/bowtie2/Bowtie2Task.h
- src/plugins/external_tool_support/src/bowtie2/Bowtie2Worker.cpp
- src/plugins/external_tool_support/src/bowtie2/Bowtie2Worker.h
- src/plugins/external_tool_support/src/bowtie2/bowtie2_tests/Bowtie2Tests.cpp
- src/plugins/external_tool_support/src/bowtie2/bowtie2_tests/Bowtie2Tests.h
- src/plugins/external_tool_support/src/bwa/BwaMemWorker.cpp
- src/plugins/external_tool_support/src/bwa/BwaMemWorker.h
- src/plugins/external_tool_support/src/bwa/BwaSettingsWidget.cpp
- src/plugins/external_tool_support/src/bwa/BwaSettingsWidget.h
- src/plugins/external_tool_support/src/bwa/BwaSupport.cpp
- src/plugins/external_tool_support/src/bwa/BwaSupport.h
- src/plugins/external_tool_support/src/bwa/BwaTask.cpp
- src/plugins/external_tool_support/src/bwa/BwaTask.h
- src/plugins/external_tool_support/src/bwa/BwaWorker.cpp
- src/plugins/external_tool_support/src/bwa/BwaWorker.h
- src/plugins/external_tool_support/src/bwa/bwa_tests/bwaTests.cpp
- src/plugins/external_tool_support/src/bwa/bwa_tests/bwaTests.h
- src/plugins/external_tool_support/src/cap3/CAP3Support.cpp
- src/plugins/external_tool_support/src/cap3/CAP3Support.h
- src/plugins/external_tool_support/src/cap3/CAP3SupportDialog.cpp
- src/plugins/external_tool_support/src/cap3/CAP3SupportDialog.h
- src/plugins/external_tool_support/src/cap3/CAP3SupportTask.cpp
- src/plugins/external_tool_support/src/cap3/CAP3SupportTask.h
- src/plugins/external_tool_support/src/cap3/CAP3Worker.cpp
- src/plugins/external_tool_support/src/cap3/CAP3Worker.h
- src/plugins/external_tool_support/src/clustalo/ClustalOSupport.cpp
- src/plugins/external_tool_support/src/clustalo/ClustalOSupport.h
- src/plugins/external_tool_support/src/clustalo/ClustalOSupportRunDialog.cpp
- src/plugins/external_tool_support/src/clustalo/ClustalOSupportRunDialog.h
- src/plugins/external_tool_support/src/clustalo/ClustalOSupportTask.cpp
- src/plugins/external_tool_support/src/clustalo/ClustalOSupportTask.h
- src/plugins/external_tool_support/src/clustalo/ClustalOWorker.cpp
- src/plugins/external_tool_support/src/clustalo/ClustalOWorker.h
- src/plugins/external_tool_support/src/clustalw/ClustalWSupport.cpp
- src/plugins/external_tool_support/src/clustalw/ClustalWSupport.h
- src/plugins/external_tool_support/src/clustalw/ClustalWSupportRunDialog.cpp
- src/plugins/external_tool_support/src/clustalw/ClustalWSupportRunDialog.h
- src/plugins/external_tool_support/src/clustalw/ClustalWSupportTask.cpp
- src/plugins/external_tool_support/src/clustalw/ClustalWSupportTask.h
- src/plugins/external_tool_support/src/clustalw/ClustalWWorker.cpp
- src/plugins/external_tool_support/src/clustalw/ClustalWWorker.h
- src/plugins/external_tool_support/src/cufflinks/CuffdiffSupportTask.cpp
- src/plugins/external_tool_support/src/cufflinks/CuffdiffSupportTask.h
- src/plugins/external_tool_support/src/cufflinks/CuffdiffWorker.cpp
- src/plugins/external_tool_support/src/cufflinks/CuffdiffWorker.h
- src/plugins/external_tool_support/src/cufflinks/CufflinksSettings.cpp
- src/plugins/external_tool_support/src/cufflinks/CufflinksSettings.h
- src/plugins/external_tool_support/src/cufflinks/CufflinksSupport.cpp
- src/plugins/external_tool_support/src/cufflinks/CufflinksSupport.h
- src/plugins/external_tool_support/src/cufflinks/CufflinksSupportTask.cpp
- src/plugins/external_tool_support/src/cufflinks/CufflinksSupportTask.h
- src/plugins/external_tool_support/src/cufflinks/CufflinksWorker.cpp
- src/plugins/external_tool_support/src/cufflinks/CufflinksWorker.h
- src/plugins/external_tool_support/src/cufflinks/CuffmergeSupportTask.cpp
- src/plugins/external_tool_support/src/cufflinks/CuffmergeSupportTask.h
- src/plugins/external_tool_support/src/cufflinks/CuffmergeWorker.cpp
- src/plugins/external_tool_support/src/cufflinks/CuffmergeWorker.h
- src/plugins/external_tool_support/src/cufflinks/GffreadSupportTask.cpp
- src/plugins/external_tool_support/src/cufflinks/GffreadSupportTask.h
- src/plugins/external_tool_support/src/cufflinks/GffreadWorker.cpp
- src/plugins/external_tool_support/src/cufflinks/GffreadWorker.h
- src/plugins/external_tool_support/src/custom_tools/CustomToolConfigParser.cpp
- src/plugins/external_tool_support/src/custom_tools/CustomToolConfigParser.h
- src/plugins/external_tool_support/src/custom_tools/ImportCustomToolsTask.cpp
- src/plugins/external_tool_support/src/custom_tools/ImportCustomToolsTask.h
- src/plugins/external_tool_support/src/custom_tools/ImportExternalToolDialog.cpp
- src/plugins/external_tool_support/src/custom_tools/ImportExternalToolDialog.h
- src/plugins/external_tool_support/src/custom_tools/LoadCustomExternalToolsTask.cpp
- src/plugins/external_tool_support/src/custom_tools/LoadCustomExternalToolsTask.h
- src/plugins/external_tool_support/src/custom_tools/RegisterCustomToolTask.cpp
- src/plugins/external_tool_support/src/custom_tools/RegisterCustomToolTask.h
- src/plugins/external_tool_support/src/fastqc/FastqcSupport.cpp
- src/plugins/external_tool_support/src/fastqc/FastqcSupport.h
- src/plugins/external_tool_support/src/fastqc/FastqcTask.cpp
- src/plugins/external_tool_support/src/fastqc/FastqcTask.h
- src/plugins/external_tool_support/src/fastqc/FastqcWorker.cpp
- src/plugins/external_tool_support/src/fastqc/FastqcWorker.h
- src/plugins/external_tool_support/src/fasttree/FastTreeSupport.cpp
- src/plugins/external_tool_support/src/fasttree/FastTreeSupport.h
- src/plugins/external_tool_support/src/fasttree/FastTreeTask.cpp
- src/plugins/external_tool_support/src/fasttree/FastTreeTask.h
- src/plugins/external_tool_support/src/fasttree/FastTreeWidget.cpp
- src/plugins/external_tool_support/src/fasttree/FastTreeWidget.h
- src/plugins/external_tool_support/src/hmmer/ConvertAlignment2StockholmTask.cpp
- src/plugins/external_tool_support/src/hmmer/ConvertAlignment2StockholmTask.h
- src/plugins/external_tool_support/src/hmmer/HmmerBuildDialog.cpp
- src/plugins/external_tool_support/src/hmmer/HmmerBuildDialog.h
- src/plugins/external_tool_support/src/hmmer/HmmerBuildFromFileTask.cpp
- src/plugins/external_tool_support/src/hmmer/HmmerBuildFromFileTask.h
- src/plugins/external_tool_support/src/hmmer/HmmerBuildFromMsaTask.cpp
- src/plugins/external_tool_support/src/hmmer/HmmerBuildFromMsaTask.h
- src/plugins/external_tool_support/src/hmmer/HmmerBuildSettings.cpp
- src/plugins/external_tool_support/src/hmmer/HmmerBuildSettings.h
- src/plugins/external_tool_support/src/hmmer/HmmerBuildTask.cpp
- src/plugins/external_tool_support/src/hmmer/HmmerBuildTask.h
- src/plugins/external_tool_support/src/hmmer/HmmerBuildTaskTest.cpp
- src/plugins/external_tool_support/src/hmmer/HmmerBuildTaskTest.h
- src/plugins/external_tool_support/src/hmmer/HmmerBuildWorker.cpp
- src/plugins/external_tool_support/src/hmmer/HmmerBuildWorker.h
- src/plugins/external_tool_support/src/hmmer/HmmerParseSearchResultsTask.cpp
- src/plugins/external_tool_support/src/hmmer/HmmerParseSearchResultsTask.h
- src/plugins/external_tool_support/src/hmmer/HmmerSearchDialog.cpp
- src/plugins/external_tool_support/src/hmmer/HmmerSearchDialog.h
- src/plugins/external_tool_support/src/hmmer/HmmerSearchSettings.cpp
- src/plugins/external_tool_support/src/hmmer/HmmerSearchSettings.h
- src/plugins/external_tool_support/src/hmmer/HmmerSearchTask.cpp
- src/plugins/external_tool_support/src/hmmer/HmmerSearchTask.h
- src/plugins/external_tool_support/src/hmmer/HmmerSearchTaskTest.cpp
- src/plugins/external_tool_support/src/hmmer/HmmerSearchTaskTest.h
- src/plugins/external_tool_support/src/hmmer/HmmerSearchWorker.cpp
- src/plugins/external_tool_support/src/hmmer/HmmerSearchWorker.h
- src/plugins/external_tool_support/src/hmmer/HmmerSupport.cpp
- src/plugins/external_tool_support/src/hmmer/HmmerSupport.h
- src/plugins/external_tool_support/src/hmmer/HmmerTests.h
- src/plugins/external_tool_support/src/hmmer/PhmmerSearchDialog.cpp
- src/plugins/external_tool_support/src/hmmer/PhmmerSearchDialog.h
- src/plugins/external_tool_support/src/hmmer/PhmmerSearchSettings.cpp
- src/plugins/external_tool_support/src/hmmer/PhmmerSearchSettings.h
- src/plugins/external_tool_support/src/hmmer/PhmmerSearchTask.cpp
- src/plugins/external_tool_support/src/hmmer/PhmmerSearchTask.h
- src/plugins/external_tool_support/src/hmmer/PhmmerSearchTaskTest.cpp
- src/plugins/external_tool_support/src/hmmer/PhmmerSearchTaskTest.h
- src/plugins/external_tool_support/src/iqtree/CmdlineParamsParser.cpp
- src/plugins/external_tool_support/src/iqtree/CmdlineParamsParser.h
- src/plugins/external_tool_support/src/iqtree/IQTreeSupport.cpp
- src/plugins/external_tool_support/src/iqtree/IQTreeSupport.h
- src/plugins/external_tool_support/src/iqtree/IQTreeTask.cpp
- src/plugins/external_tool_support/src/iqtree/IQTreeTask.h
- src/plugins/external_tool_support/src/iqtree/IQTreeWidget.cpp
- src/plugins/external_tool_support/src/iqtree/IQTreeWidget.h
- src/plugins/external_tool_support/src/java/JavaSupport.cpp
- src/plugins/external_tool_support/src/java/JavaSupport.h
- src/plugins/external_tool_support/src/kalign/KalignSupport.cpp
- src/plugins/external_tool_support/src/kalign/KalignSupport.h
- src/plugins/external_tool_support/src/kalign/KalignSupportRunDialog.cpp
- src/plugins/external_tool_support/src/kalign/KalignSupportRunDialog.h
- src/plugins/external_tool_support/src/kalign/KalignSupportTask.cpp
- src/plugins/external_tool_support/src/kalign/KalignSupportTask.h
- src/plugins/external_tool_support/src/kalign/KalignWorker.cpp
- src/plugins/external_tool_support/src/kalign/KalignWorker.h
- src/plugins/external_tool_support/src/kalign/pairwise/KalignPairwiseAlignmentGUIExtensionFactory.h
- src/plugins/external_tool_support/src/kalign/pairwise/KalignPairwiseAlignmentTask.h
- + src/plugins/external_tool_support/src/kraken2/Kraken2ClassifyLogParser.cpp
- + src/plugins/external_tool_support/src/kraken2/Kraken2ClassifyLogParser.h
- + src/plugins/external_tool_support/src/kraken2/Kraken2ClassifyPrompter.cpp
- + src/plugins/external_tool_support/src/kraken2/Kraken2ClassifyPrompter.h
- + src/plugins/external_tool_support/src/kraken2/Kraken2ClassifyTask.cpp
- + src/plugins/external_tool_support/src/kraken2/Kraken2ClassifyTask.h
- + src/plugins/external_tool_support/src/kraken2/Kraken2ClassifyValidator.cpp
- + src/plugins/external_tool_support/src/kraken2/Kraken2ClassifyValidator.h
- + src/plugins/external_tool_support/src/kraken2/Kraken2ClassifyWorker.cpp
- + src/plugins/external_tool_support/src/kraken2/Kraken2ClassifyWorker.h
- + src/plugins/external_tool_support/src/kraken2/Kraken2ClassifyWorkerFactory.cpp
- + src/plugins/external_tool_support/src/kraken2/Kraken2ClassifyWorkerFactory.h
- + src/plugins/external_tool_support/src/kraken2/Kraken2Support.cpp
- + src/plugins/external_tool_support/src/kraken2/Kraken2Support.h
- + src/plugins/external_tool_support/src/kraken2/Kraken2TranslateLogParser.cpp
- + src/plugins/external_tool_support/src/kraken2/Kraken2TranslateLogParser.h
- src/plugins/external_tool_support/src/mafft/MAFFTSupport.cpp
- src/plugins/external_tool_support/src/mafft/MAFFTSupport.h
- src/plugins/external_tool_support/src/mafft/MAFFTSupportRunDialog.cpp
- src/plugins/external_tool_support/src/mafft/MAFFTSupportRunDialog.h
- src/plugins/external_tool_support/src/mafft/MAFFTSupportTask.cpp
- src/plugins/external_tool_support/src/mafft/MAFFTSupportTask.h
- src/plugins/external_tool_support/src/mafft/MAFFTWorker.cpp
- src/plugins/external_tool_support/src/mafft/MAFFTWorker.h
- src/plugins/external_tool_support/src/mafft/MafftAddToAlignmentTask.cpp
- src/plugins/external_tool_support/src/mafft/MafftAddToAlignmentTask.h
- src/plugins/external_tool_support/src/mfold/MfoldDialog.cpp
- src/plugins/external_tool_support/src/mfold/MfoldDialog.h
- src/plugins/external_tool_support/src/mfold/MfoldSettings.cpp
- src/plugins/external_tool_support/src/mfold/MfoldSettings.h
- src/plugins/external_tool_support/src/mfold/MfoldSupport.cpp
- src/plugins/external_tool_support/src/mfold/MfoldSupport.h
- src/plugins/external_tool_support/src/mfold/MfoldTask.cpp
- src/plugins/external_tool_support/src/mfold/MfoldTask.h
- src/plugins/external_tool_support/src/mfold/MfoldTests.cpp
- src/plugins/external_tool_support/src/mfold/MfoldTests.h
- src/plugins/external_tool_support/src/mrbayes/MrBayesDialogWidget.cpp
- src/plugins/external_tool_support/src/mrbayes/MrBayesDialogWidget.h
- src/plugins/external_tool_support/src/mrbayes/MrBayesSupport.cpp
- src/plugins/external_tool_support/src/mrbayes/MrBayesSupport.h
- src/plugins/external_tool_support/src/mrbayes/MrBayesTask.cpp
- src/plugins/external_tool_support/src/mrbayes/MrBayesTask.h
- src/plugins/external_tool_support/src/mrbayes/MrBayesTests.cpp
- src/plugins/external_tool_support/src/mrbayes/MrBayesTests.h
- src/plugins/external_tool_support/src/perl/PerlSupport.cpp
- src/plugins/external_tool_support/src/perl/PerlSupport.h
- src/plugins/external_tool_support/src/phyml/PhyMLDialogWidget.cpp
- src/plugins/external_tool_support/src/phyml/PhyMLDialogWidget.h
- src/plugins/external_tool_support/src/phyml/PhyMLSupport.cpp
- src/plugins/external_tool_support/src/phyml/PhyMLSupport.h
- src/plugins/external_tool_support/src/phyml/PhyMLTask.cpp
- src/plugins/external_tool_support/src/phyml/PhyMLTask.h
- src/plugins/external_tool_support/src/phyml/PhyMLTests.cpp
- src/plugins/external_tool_support/src/phyml/PhyMLTests.h
- src/plugins/external_tool_support/src/python/Python3ModuleCutadaptSupport.cpp
- src/plugins/external_tool_support/src/python/Python3ModuleCutadaptSupport.h
- src/plugins/external_tool_support/src/python/Python3ModuleCutadaptWorker.cpp
- src/plugins/external_tool_support/src/python/Python3ModuleCutadaptWorker.h
- src/plugins/external_tool_support/src/python/Python3Support.cpp
- src/plugins/external_tool_support/src/python/Python3Support.h
- src/plugins/external_tool_support/src/samtools/BcfToolsSupport.cpp
- src/plugins/external_tool_support/src/samtools/BcfToolsSupport.h
- src/plugins/external_tool_support/src/samtools/SamToolsExtToolSupport.cpp
- src/plugins/external_tool_support/src/samtools/SamToolsExtToolSupport.h
- src/plugins/external_tool_support/src/samtools/TabixSupport.cpp
- src/plugins/external_tool_support/src/samtools/TabixSupport.h
- src/plugins/external_tool_support/src/samtools/TabixSupportTask.cpp
- src/plugins/external_tool_support/src/samtools/TabixSupportTask.h
- src/plugins/external_tool_support/src/snpeff/SnpEffDatabaseDelegate.cpp
- src/plugins/external_tool_support/src/snpeff/SnpEffDatabaseDelegate.h
- src/plugins/external_tool_support/src/snpeff/SnpEffDatabaseListModel.cpp
- src/plugins/external_tool_support/src/snpeff/SnpEffDatabaseListModel.h
- src/plugins/external_tool_support/src/snpeff/SnpEffDatabaseListTask.cpp
- src/plugins/external_tool_support/src/snpeff/SnpEffDatabaseListTask.h
- src/plugins/external_tool_support/src/snpeff/SnpEffSupport.cpp
- src/plugins/external_tool_support/src/snpeff/SnpEffSupport.h
- src/plugins/external_tool_support/src/snpeff/SnpEffTask.cpp
- src/plugins/external_tool_support/src/snpeff/SnpEffTask.h
- src/plugins/external_tool_support/src/snpeff/SnpEffWorker.cpp
- src/plugins/external_tool_support/src/snpeff/SnpEffWorker.h
- src/plugins/external_tool_support/src/spades/SpadesDelegate.cpp
- src/plugins/external_tool_support/src/spades/SpadesDelegate.h
- src/plugins/external_tool_support/src/spades/SpadesPortRelationDescriptor.cpp
- src/plugins/external_tool_support/src/spades/SpadesPortRelationDescriptor.h
- src/plugins/external_tool_support/src/spades/SpadesSettingsWidget.cpp
- src/plugins/external_tool_support/src/spades/SpadesSettingsWidget.h
- src/plugins/external_tool_support/src/spades/SpadesSlotRelationDescriptor.cpp
- src/plugins/external_tool_support/src/spades/SpadesSlotRelationDescriptor.h
- src/plugins/external_tool_support/src/spades/SpadesSupport.cpp
- src/plugins/external_tool_support/src/spades/SpadesSupport.h
- src/plugins/external_tool_support/src/spades/SpadesTask.cpp
- src/plugins/external_tool_support/src/spades/SpadesTask.h
- src/plugins/external_tool_support/src/spades/SpadesTaskTest.cpp
- src/plugins/external_tool_support/src/spades/SpadesTaskTest.h
- src/plugins/external_tool_support/src/spades/SpadesWorker.cpp
- src/plugins/external_tool_support/src/spades/SpadesWorker.h
- src/plugins/external_tool_support/src/spidey/SpideySupport.cpp
- src/plugins/external_tool_support/src/spidey/SpideySupport.h
- src/plugins/external_tool_support/src/spidey/SpideySupportTask.cpp
- src/plugins/external_tool_support/src/spidey/SpideySupportTask.h
- src/plugins/external_tool_support/src/stringtie/StringTieSupport.cpp
- src/plugins/external_tool_support/src/stringtie/StringTieSupport.h
- src/plugins/external_tool_support/src/stringtie/StringTieTask.cpp
- src/plugins/external_tool_support/src/stringtie/StringTieTask.h
- src/plugins/external_tool_support/src/stringtie/StringTieWorker.cpp
- src/plugins/external_tool_support/src/stringtie/StringTieWorker.h
- src/plugins/external_tool_support/src/stringtie/StringtieGeneAbundanceReportPrompter.cpp
- src/plugins/external_tool_support/src/stringtie/StringtieGeneAbundanceReportPrompter.h
- src/plugins/external_tool_support/src/stringtie/StringtieGeneAbundanceReportTask.cpp
- src/plugins/external_tool_support/src/stringtie/StringtieGeneAbundanceReportTask.h
- src/plugins/external_tool_support/src/stringtie/StringtieGeneAbundanceReportWorker.cpp
- src/plugins/external_tool_support/src/stringtie/StringtieGeneAbundanceReportWorker.h
- src/plugins/external_tool_support/src/stringtie/StringtieGeneAbundanceReportWorkerFactory.cpp
- src/plugins/external_tool_support/src/stringtie/StringtieGeneAbundanceReportWorkerFactory.h
- src/plugins/external_tool_support/src/tophat/TopHatSettings.cpp
- src/plugins/external_tool_support/src/tophat/TopHatSettings.h
- src/plugins/external_tool_support/src/tophat/TopHatSupport.cpp
- src/plugins/external_tool_support/src/tophat/TopHatSupport.h
- src/plugins/external_tool_support/src/tophat/TopHatSupportTask.cpp
- src/plugins/external_tool_support/src/tophat/TopHatSupportTask.h
- src/plugins/external_tool_support/src/tophat/TopHatWorker.cpp
- src/plugins/external_tool_support/src/tophat/TopHatWorker.h
- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticDelegate.cpp
- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticDelegate.h
- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticLogParser.cpp
- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticLogParser.h
- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticPrompter.cpp
- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticPrompter.h
- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticStep.cpp
- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticStep.h
- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticSupport.cpp
- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticSupport.h
- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticTask.cpp
- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticTask.h
- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticWorker.cpp
- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticWorker.h
- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticWorkerFactory.cpp
- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticWorkerFactory.h
- src/plugins/external_tool_support/src/trimmomatic/steps/AvgQualStep.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/AvgQualStep.h
- src/plugins/external_tool_support/src/trimmomatic/steps/CropStep.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/CropStep.h
- src/plugins/external_tool_support/src/trimmomatic/steps/HeadCropStep.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/HeadCropStep.h
- src/plugins/external_tool_support/src/trimmomatic/steps/IlluminaClipStep.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/IlluminaClipStep.h
- src/plugins/external_tool_support/src/trimmomatic/steps/LeadingStep.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/LeadingStep.h
- src/plugins/external_tool_support/src/trimmomatic/steps/MaxInfoStep.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/MaxInfoStep.h
- src/plugins/external_tool_support/src/trimmomatic/steps/MinLenStep.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/MinLenStep.h
- src/plugins/external_tool_support/src/trimmomatic/steps/SlidingWindowStep.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/SlidingWindowStep.h
- src/plugins/external_tool_support/src/trimmomatic/steps/ToPhred33Step.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/ToPhred33Step.h
- src/plugins/external_tool_support/src/trimmomatic/steps/ToPhred64Step.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/ToPhred64Step.h
- src/plugins/external_tool_support/src/trimmomatic/steps/TrailingStep.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/TrailingStep.h
- src/plugins/external_tool_support/src/trimmomatic/util/LengthSettingsWidget.cpp
- src/plugins/external_tool_support/src/trimmomatic/util/LengthSettingsWidget.h
- src/plugins/external_tool_support/src/trimmomatic/util/LineEditHighlighter.cpp
- src/plugins/external_tool_support/src/trimmomatic/util/LineEditHighlighter.h
- src/plugins/external_tool_support/src/trimmomatic/util/NoSettingsWidget.cpp
- src/plugins/external_tool_support/src/trimmomatic/util/NoSettingsWidget.h
- src/plugins/external_tool_support/src/trimmomatic/util/QualitySettingsWidget.cpp
- src/plugins/external_tool_support/src/trimmomatic/util/QualitySettingsWidget.h
- src/plugins/external_tool_support/src/utils/AlignMsaAction.cpp
- src/plugins/external_tool_support/src/utils/AlignMsaAction.h
- src/plugins/external_tool_support/src/utils/BaseShortReadsAlignerWorker.cpp
- src/plugins/external_tool_support/src/utils/BaseShortReadsAlignerWorker.h
- src/plugins/external_tool_support/src/utils/ExportTasks.cpp
- src/plugins/external_tool_support/src/utils/ExportTasks.h
- src/plugins/external_tool_support/src/utils/ExternalToolSearchTask.cpp
- src/plugins/external_tool_support/src/utils/ExternalToolSearchTask.h
- src/plugins/external_tool_support/src/utils/ExternalToolSupportAction.cpp
- src/plugins/external_tool_support/src/utils/ExternalToolSupportAction.h
- src/plugins/external_tool_support/src/utils/ExternalToolUtils.cpp
- src/plugins/external_tool_support/src/utils/ExternalToolUtils.h
- src/plugins/external_tool_support/src/utils/ExternalToolValidateTask.cpp
- src/plugins/external_tool_support/src/utils/ExternalToolValidateTask.h
- src/plugins/external_tool_support/src/utils/OutputCollector.cpp
- src/plugins/external_tool_support/src/utils/OutputCollector.h
- src/plugins/external_tool_support/src/vcftools/VcfConsensusSupport.cpp
- src/plugins/external_tool_support/src/vcftools/VcfConsensusSupport.h
- src/plugins/external_tool_support/src/vcftools/VcfConsensusSupportTask.cpp
- src/plugins/external_tool_support/src/vcftools/VcfConsensusSupportTask.h
- src/plugins/external_tool_support/src/vcftools/VcfConsensusWorker.cpp
- src/plugins/external_tool_support/src/vcftools/VcfConsensusWorker.h
- src/plugins/external_tool_support/src/vcfutils/VcfutilsSupport.cpp
- src/plugins/external_tool_support/src/vcfutils/VcfutilsSupport.h
- src/plugins/external_tool_support/transl/russian.ts
- src/plugins/genome_aligner/src/BuildSArraySettingsWidget.cpp
- src/plugins/genome_aligner/src/BuildSArraySettingsWidget.h
- src/plugins/genome_aligner/src/DataBunch.cpp
- src/plugins/genome_aligner/src/DataBunch.h
- src/plugins/genome_aligner/src/GenomeAlignerCMDLineTask.cpp
- src/plugins/genome_aligner/src/GenomeAlignerCMDLineTask.h
- src/plugins/genome_aligner/src/GenomeAlignerFindTask.cpp
- src/plugins/genome_aligner/src/GenomeAlignerFindTask.h
- src/plugins/genome_aligner/src/GenomeAlignerIO.cpp
- src/plugins/genome_aligner/src/GenomeAlignerIO.h
- src/plugins/genome_aligner/src/GenomeAlignerIndex.cpp
- src/plugins/genome_aligner/src/GenomeAlignerIndex.h
- src/plugins/genome_aligner/src/GenomeAlignerIndexPart.cpp
- src/plugins/genome_aligner/src/GenomeAlignerIndexPart.h
- src/plugins/genome_aligner/src/GenomeAlignerIndexTask.cpp
- src/plugins/genome_aligner/src/GenomeAlignerIndexTask.h
- src/plugins/genome_aligner/src/GenomeAlignerIndexWorker.cpp
- src/plugins/genome_aligner/src/GenomeAlignerIndexWorker.h
- src/plugins/genome_aligner/src/GenomeAlignerPlugin.cpp
- src/plugins/genome_aligner/src/GenomeAlignerPlugin.h
- src/plugins/genome_aligner/src/GenomeAlignerSearchQuery.cpp
- src/plugins/genome_aligner/src/GenomeAlignerSearchQuery.h
- src/plugins/genome_aligner/src/GenomeAlignerSettingsController.cpp
- src/plugins/genome_aligner/src/GenomeAlignerSettingsController.h
- src/plugins/genome_aligner/src/GenomeAlignerSettingsWidget.cpp
- src/plugins/genome_aligner/src/GenomeAlignerSettingsWidget.h
- src/plugins/genome_aligner/src/GenomeAlignerTask.cpp
- src/plugins/genome_aligner/src/GenomeAlignerTask.h
- src/plugins/genome_aligner/src/GenomeAlignerWorker.cpp
- src/plugins/genome_aligner/src/GenomeAlignerWorker.h
- src/plugins/genome_aligner/src/GenomeAlignerWriteTask.cpp
- src/plugins/genome_aligner/src/GenomeAlignerWriteTask.h
- src/plugins/genome_aligner/src/ReadShortReadsSubTask.cpp
- src/plugins/genome_aligner/src/ReadShortReadsSubTask.h
- src/plugins/genome_aligner/src/WriteAlignedReadsSubTask.cpp
- src/plugins/genome_aligner/src/WriteAlignedReadsSubTask.h
- src/plugins/linkdata_support/src/LinkDataScriptLibrary.cpp
- src/plugins/linkdata_support/src/LinkDataScriptLibrary.h
- src/plugins/linkdata_support/src/LinkDataSupportPlugin.cpp
- src/plugins/linkdata_support/src/LinkDataSupportPlugin.h
- src/plugins/orf_marker/src/ORFDialog.cpp
- src/plugins/orf_marker/src/ORFDialog.h
- src/plugins/orf_marker/src/ORFMarkerPlugin.cpp
- src/plugins/orf_marker/src/ORFMarkerPlugin.h
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- src/plugins/orf_marker/src/ORFQuery.cpp
- src/plugins/orf_marker/src/ORFQuery.h
- src/plugins/orf_marker/src/ORFWorker.cpp
- src/plugins/orf_marker/src/ORFWorker.h
- src/plugins/pcr/src/EditPrimerDialog.cpp
- src/plugins/pcr/src/EditPrimerDialog.h
- src/plugins/pcr/src/ExtractProductTask.cpp
- src/plugins/pcr/src/ExtractProductTask.h
- src/plugins/pcr/src/FindPrimerPairsWorker.cpp
- src/plugins/pcr/src/FindPrimerPairsWorker.h
- src/plugins/pcr/src/InSilicoPcrOPWidgetFactory.cpp
- src/plugins/pcr/src/InSilicoPcrOPWidgetFactory.h
- src/plugins/pcr/src/InSilicoPcrOptionPanelWidget.cpp
- src/plugins/pcr/src/InSilicoPcrOptionPanelWidget.h
- src/plugins/pcr/src/InSilicoPcrProductsTable.cpp
- src/plugins/pcr/src/InSilicoPcrProductsTable.h
- src/plugins/pcr/src/InSilicoPcrTask.cpp
- src/plugins/pcr/src/InSilicoPcrTask.h
- src/plugins/pcr/src/InSilicoPcrWorker.cpp
- src/plugins/pcr/src/InSilicoPcrWorker.h
- src/plugins/pcr/src/InSilicoPcrWorkflowTask.cpp
- src/plugins/pcr/src/InSilicoPcrWorkflowTask.h
- src/plugins/pcr/src/PcrOptionsPanelSavableTab.cpp
- src/plugins/pcr/src/PcrOptionsPanelSavableTab.h
- src/plugins/pcr/src/PcrPlugin.cpp
- src/plugins/pcr/src/PcrPlugin.h
- src/plugins/pcr/src/PrimerGroupBox.cpp
- src/plugins/pcr/src/PrimerGroupBox.h
- src/plugins/pcr/src/PrimerLibrary.cpp
- src/plugins/pcr/src/PrimerLibrary.h
- src/plugins/pcr/src/PrimerLibraryMdiWindow.cpp
- src/plugins/pcr/src/PrimerLibraryMdiWindow.h
- src/plugins/pcr/src/PrimerLibrarySelector.cpp
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- src/plugins/pcr/src/PrimerLibraryTable.cpp
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- src/plugins/pcr/src/PrimerLibraryTableController.cpp
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- src/plugins/pcr/src/PrimerLibraryWidget.cpp
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- src/plugins/pcr/src/PrimersDetailsDialog.cpp
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- src/plugins/pcr/src/export/ExportPrimersDialog.cpp
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- src/plugins/pcr/src/export/ExportPrimersToDatabaseTask.cpp
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- src/plugins/pcr/src/export/ExportPrimersToLocalFileTask.cpp
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- src/plugins/pcr/src/import/ImportPrimerFromObjectTask.cpp
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- src/plugins/pcr/src/import/ImportPrimersDialog.cpp
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- src/plugins/pcr/src/import/ImportPrimersFromFileTask.cpp
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- src/plugins/pcr/src/import/ImportPrimersFromFolderTask.cpp
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- src/plugins/pcr/src/import/ImportPrimersMultiTask.cpp
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- src/plugins/perf_monitor/src/PerfMonitorPlugin.cpp
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- src/plugins/perf_monitor/src/PerfMonitorView.cpp
- src/plugins/perf_monitor/src/PerfMonitorView.h
- src/plugins/query_designer/src/QDDocument.cpp
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- src/plugins/query_designer/src/QDGroupsEditor.cpp
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- src/plugins/query_designer/src/QDRunDialog.cpp
- src/plugins/query_designer/src/QDRunDialog.h
- src/plugins/query_designer/src/QDSamples.cpp
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- src/plugins/query_designer/src/QDWorker.cpp
- src/plugins/query_designer/src/QDWorker.h
- src/plugins/query_designer/src/QueryDesignerPlugin.cpp
- src/plugins/query_designer/src/QueryDesignerPlugin.h
- src/plugins/query_designer/src/QueryEditor.cpp
- src/plugins/query_designer/src/QueryEditor.h
- src/plugins/query_designer/src/QueryPalette.cpp
- src/plugins/query_designer/src/QueryPalette.h
- src/plugins/query_designer/src/QueryProcCfgDelegate.h
- src/plugins/query_designer/src/QueryProcCfgModel.h
- src/plugins/query_designer/src/QueryViewAdapter.cpp
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- src/plugins/query_designer/src/QueryViewController.cpp
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- src/plugins/query_designer/src/QueryViewItems.cpp
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- src/plugins/query_designer/src/library/QDFindActor.cpp
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- src/plugins/query_designer/src/library/QDFindPolyRegionsActor.cpp
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- src/plugins/query_designer/src/library/QDGcContentActor.cpp
- src/plugins/query_designer/src/library/QDGcContentActor.h
- src/plugins/remote_blast/src/BlastQuery.cpp
- src/plugins/remote_blast/src/BlastQuery.h
- src/plugins/remote_blast/src/DBRequestFactory.h
- src/plugins/remote_blast/src/HttpRequest.h
- src/plugins/remote_blast/src/HttpRequestBLAST.cpp
- src/plugins/remote_blast/src/RemoteBLASTConsts.cpp
- src/plugins/remote_blast/src/RemoteBLASTConsts.h
- src/plugins/remote_blast/src/RemoteBLASTPlugin.cpp
- src/plugins/remote_blast/src/RemoteBLASTPlugin.h
- src/plugins/remote_blast/src/RemoteBLASTPluginTests.cpp
- src/plugins/remote_blast/src/RemoteBLASTPluginTests.h
- src/plugins/remote_blast/src/RemoteBLASTPrimerPairToAnnotationsTask.cpp
- src/plugins/remote_blast/src/RemoteBLASTPrimerPairToAnnotationsTask.h
- src/plugins/remote_blast/src/RemoteBLASTPrimerPairsToAnnotationsTask.cpp
- src/plugins/remote_blast/src/RemoteBLASTPrimerPairsToAnnotationsTask.h
- src/plugins/remote_blast/src/RemoteBLASTTask.cpp
- src/plugins/remote_blast/src/RemoteBLASTTask.h
- src/plugins/remote_blast/src/RemoteBLASTWorker.cpp
- src/plugins/remote_blast/src/RemoteBLASTWorker.h
- src/plugins/remote_blast/src/SendSelectionDialog.cpp
- src/plugins/remote_blast/src/SendSelectionDialog.h
- src/plugins/repeat_finder/src/FindRepeatsDialog.cpp
- src/plugins/repeat_finder/src/FindRepeatsDialog.h
- src/plugins/repeat_finder/src/FindRepeatsTask.cpp
- src/plugins/repeat_finder/src/FindRepeatsTask.h
- src/plugins/repeat_finder/src/FindTandemsDialog.cpp
- src/plugins/repeat_finder/src/FindTandemsDialog.h
- src/plugins/repeat_finder/src/RFBase.cpp
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- src/plugins/repeat_finder/src/RFConstants.h
- src/plugins/repeat_finder/src/RFDiagonal.cpp
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- src/plugins/repeat_finder/src/RFSArray.cpp
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- src/plugins/repeat_finder/src/RFSArrayWK.cpp
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- src/plugins/repeat_finder/src/RF_BitMask.h
- src/plugins/repeat_finder/src/RF_SArray_TandemFinder.cpp
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- src/plugins/repeat_finder/src/RF_SuffixArray.cpp
- src/plugins/repeat_finder/src/RF_SuffixArray.h
- src/plugins/repeat_finder/src/RepeatFinderPlugin.cpp
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- src/plugins/repeat_finder/src/TandemQuery.cpp
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- src/plugins/smith_waterman/smith_waterman.pri
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- src/plugins/test_runner/resource.h
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- src/plugins/weight_matrix/src/PMatrixFormat.cpp
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- src/plugins/weight_matrix/src/PWMSearchDialogController.cpp
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- src/plugins/workflow_designer/src/ActorCfgFilterProxyModel.cpp
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- src/plugins/workflow_designer/src/library/MultiplexerWorker.h
- src/plugins/workflow_designer/src/library/PassFilterWorker.cpp
- src/plugins/workflow_designer/src/library/PassFilterWorker.h
- src/plugins/workflow_designer/src/library/ReadAnnotationsWorker.cpp
- src/plugins/workflow_designer/src/library/ReadAnnotationsWorker.h
- src/plugins/workflow_designer/src/library/ReadAssemblyWorker.cpp
- src/plugins/workflow_designer/src/library/ReadAssemblyWorker.h
- src/plugins/workflow_designer/src/library/ReadVariationWorker.cpp
- src/plugins/workflow_designer/src/library/ReadVariationWorker.h
- src/plugins/workflow_designer/src/library/RemoteDBFetcherWorker.cpp
- src/plugins/workflow_designer/src/library/RemoteDBFetcherWorker.h
- src/plugins/workflow_designer/src/library/RenameChromosomeInVariationWorker.cpp
- src/plugins/workflow_designer/src/library/RenameChromosomeInVariationWorker.h
- src/plugins/workflow_designer/src/library/ReverseComplementWorker.cpp
- src/plugins/workflow_designer/src/library/ReverseComplementWorker.h
- src/plugins/workflow_designer/src/library/RmdupBamWorker.cpp
- src/plugins/workflow_designer/src/library/RmdupBamWorker.h
- src/plugins/workflow_designer/src/library/SchemaWorker.cpp
- src/plugins/workflow_designer/src/library/SchemaWorker.h
- src/plugins/workflow_designer/src/library/ScriptWorker.cpp
- src/plugins/workflow_designer/src/library/ScriptWorker.h
- src/plugins/workflow_designer/src/library/SequenceQualityTrimWorker.cpp
- src/plugins/workflow_designer/src/library/SequenceQualityTrimWorker.h
- src/plugins/workflow_designer/src/library/SequenceSplitWorker.cpp
- src/plugins/workflow_designer/src/library/SequenceSplitWorker.h
- src/plugins/workflow_designer/src/library/SequencesToMSAWorker.cpp
- src/plugins/workflow_designer/src/library/SequencesToMSAWorker.h
- src/plugins/workflow_designer/src/library/SortBamWorker.cpp
- src/plugins/workflow_designer/src/library/SortBamWorker.h
- src/plugins/workflow_designer/src/library/StatisticWorkers.cpp
- src/plugins/workflow_designer/src/library/StatisticWorkers.h
- src/plugins/workflow_designer/src/library/Text2SequenceWorker.cpp
- src/plugins/workflow_designer/src/library/Text2SequenceWorker.h
- src/plugins/workflow_designer/src/library/WriteAnnotationsWorker.cpp
- src/plugins/workflow_designer/src/library/WriteAnnotationsWorker.h
- src/plugins/workflow_designer/src/library/WriteAssemblyWorkers.cpp
- src/plugins/workflow_designer/src/library/WriteAssemblyWorkers.h
- src/plugins/workflow_designer/src/library/WriteVariationWorker.cpp
- src/plugins/workflow_designer/src/library/WriteVariationWorker.h
- src/plugins/workflow_designer/src/library/create_cmdline_based_worker/CreateCmdlineBasedWorkerWizard.cpp
- src/plugins/workflow_designer/src/library/create_cmdline_based_worker/CreateCmdlineBasedWorkerWizard.h
- src/plugins/workflow_designer/src/tasks/ReadAssemblyTask.cpp
- src/plugins/workflow_designer/src/tasks/ReadAssemblyTask.h
- src/plugins/workflow_designer/src/tasks/RenameChromosomeInVariationTask.cpp
- src/plugins/workflow_designer/src/tasks/RenameChromosomeInVariationTask.h
- src/plugins/workflow_designer/src/tasks/SequenceQualityTrimTask.cpp
- src/plugins/workflow_designer/src/tasks/SequenceQualityTrimTask.h
- src/plugins/workflow_designer/src/util/CustomWorkerUtils.cpp
- src/plugins/workflow_designer/src/util/CustomWorkerUtils.h
- src/plugins/workflow_designer/src/util/DatasetValidator.cpp
- src/plugins/workflow_designer/src/util/DatasetValidator.h
- src/plugins/workflow_designer/src/util/DatasetsCountValidator.cpp
- src/plugins/workflow_designer/src/util/DatasetsCountValidator.h
- src/plugins/workflow_designer/src/util/GrouperActionUtils.cpp
- src/plugins/workflow_designer/src/util/GrouperActionUtils.h
- src/plugins/workflow_designer/src/util/RequiredSlotsValidator.cpp
- src/plugins/workflow_designer/src/util/RequiredSlotsValidator.h
- src/plugins/workflow_designer/src/util/SaveSchemaImageUtils.cpp
- src/plugins/workflow_designer/src/util/SaveSchemaImageUtils.h
- src/plugins/workflow_designer/src/util/WorkerNameValidator.cpp
- src/plugins/workflow_designer/src/util/WorkerNameValidator.h
- src/plugins/workflow_designer/src/util/WriteAnnotationsValidator.cpp
- src/plugins/workflow_designer/src/util/WriteAnnotationsValidator.h
- src/plugins/workflow_designer/src/util/WriteSequenceValidator.cpp
- src/plugins/workflow_designer/src/util/WriteSequenceValidator.h
- src/plugins/workflow_dump/src/WorkflowDumpPlugin.cpp
- src/plugins/workflow_dump/src/WorkflowDumpPlugin.h
- src/plugins_3rdparty/ball/src/BallPlugin.cpp
- src/plugins_3rdparty/ball/src/BallPlugin.h
- src/plugins_3rdparty/ball/src/SAS.cpp
- src/plugins_3rdparty/ball/src/SAS.h
- src/plugins_3rdparty/ball/src/SES.cpp
- src/plugins_3rdparty/ball/src/SES.h
- src/plugins_3rdparty/gor4/src/GorIVAlgTask.cpp
- src/plugins_3rdparty/gor4/src/GorIVAlgTask.h
- src/plugins_3rdparty/gor4/src/GorIVPlugin.cpp
- src/plugins_3rdparty/gor4/src/GorIVPlugin.h
- src/plugins_3rdparty/hmm2/src/HMMIO.cpp
- src/plugins_3rdparty/hmm2/src/HMMIO.h
- src/plugins_3rdparty/hmm2/src/HMMIOWorker.cpp
- src/plugins_3rdparty/hmm2/src/HMMIOWorker.h
- src/plugins_3rdparty/hmm2/src/TaskLocalStorage.cpp
- src/plugins_3rdparty/hmm2/src/TaskLocalStorage.h
- src/plugins_3rdparty/hmm2/src/uHMMPlugin.cpp
- src/plugins_3rdparty/hmm2/src/uHMMPlugin.h
- src/plugins_3rdparty/hmm2/src/u_build/HMMBuildDialogController.cpp
- src/plugins_3rdparty/hmm2/src/u_build/HMMBuildDialogController.h
- src/plugins_3rdparty/hmm2/src/u_build/HMMBuildWorker.cpp
- src/plugins_3rdparty/hmm2/src/u_calibrate/HMMCalibrateDialogController.cpp
- src/plugins_3rdparty/hmm2/src/u_calibrate/HMMCalibrateDialogController.h
- src/plugins_3rdparty/hmm2/src/u_search/HMMSearchDialogController.h
- src/plugins_3rdparty/hmm2/src/u_search/HMMSearchQDActor.cpp
- src/plugins_3rdparty/hmm2/src/u_search/HMMSearchQDActor.h
- src/plugins_3rdparty/hmm2/src/u_search/HMMSearchTask.cpp
- src/plugins_3rdparty/hmm2/src/u_search/HMMSearchTask.h
- src/plugins_3rdparty/hmm2/src/u_search/HMMSearchWorker.cpp
- src/plugins_3rdparty/hmm2/src/u_tests/uhmmerTests.cpp
- src/plugins_3rdparty/phylip/src/DistanceMatrix.cpp
- src/plugins_3rdparty/phylip/src/DistanceMatrix.h
- src/plugins_3rdparty/phylip/src/NeighborJoinAdapter.cpp
- src/plugins_3rdparty/phylip/src/NeighborJoinAdapter.h
- src/plugins_3rdparty/phylip/src/NeighborJoinWidget.cpp
- src/plugins_3rdparty/phylip/src/NeighborJoinWidget.h
- src/plugins_3rdparty/phylip/src/PhylipCmdlineTask.cpp
- src/plugins_3rdparty/phylip/src/PhylipCmdlineTask.h
- src/plugins_3rdparty/phylip/src/PhylipPlugin.cpp
- src/plugins_3rdparty/phylip/src/PhylipPlugin.h
- src/plugins_3rdparty/phylip/src/PhylipPluginTests.cpp
- src/plugins_3rdparty/phylip/src/PhylipPluginTests.h
- src/plugins_3rdparty/phylip/src/PhylipTask.cpp
- src/plugins_3rdparty/phylip/src/PhylipTask.h
- src/plugins_3rdparty/phylip/src/SeqBootAdapter.cpp
- src/plugins_3rdparty/phylip/src/SeqBootAdapter.h
- src/plugins_3rdparty/primer3/src/Primer3Dialog.cpp
- src/plugins_3rdparty/primer3/src/Primer3Dialog.h
- src/plugins_3rdparty/primer3/src/Primer3Plugin.cpp
- src/plugins_3rdparty/primer3/src/Primer3Plugin.h
- src/plugins_3rdparty/primer3/src/Primer3Query.cpp
- src/plugins_3rdparty/primer3/src/Primer3Query.h
- src/plugins_3rdparty/primer3/src/Primer3Tests.cpp
- src/plugins_3rdparty/primer3/src/Primer3Tests.h
- src/plugins_3rdparty/primer3/src/task/CheckComplementTask.cpp
- src/plugins_3rdparty/primer3/src/task/CheckComplementTask.h
- src/plugins_3rdparty/primer3/src/task/FindExonRegionsTask.cpp
- src/plugins_3rdparty/primer3/src/task/FindExonRegionsTask.h
- src/plugins_3rdparty/primer3/src/task/Primer3Task.cpp
- src/plugins_3rdparty/primer3/src/task/Primer3Task.h
- src/plugins_3rdparty/primer3/src/task/Primer3TaskSettings.cpp
- src/plugins_3rdparty/primer3/src/task/Primer3TaskSettings.h
- src/plugins_3rdparty/primer3/src/task/PrimerPair.cpp
- src/plugins_3rdparty/primer3/src/task/PrimerPair.h
- src/plugins_3rdparty/primer3/src/task/PrimerSingle.cpp
- src/plugins_3rdparty/primer3/src/task/PrimerSingle.h
- src/plugins_3rdparty/primer3/src/task/ProcessPrimer3ResultsToAnnotationsTask.cpp
- src/plugins_3rdparty/primer3/src/task/ProcessPrimer3ResultsToAnnotationsTask.h
- src/plugins_3rdparty/psipred/src/PsipredAlgTask.cpp
- src/plugins_3rdparty/psipred/src/PsipredAlgTask.h
- src/plugins_3rdparty/psipred/src/PsipredPlugin.cpp
- src/plugins_3rdparty/psipred/src/PsipredPlugin.h
- src/plugins_3rdparty/ptools/src/PToolsAligner.cpp
- src/plugins_3rdparty/ptools/src/PToolsAligner.h
- src/plugins_3rdparty/ptools/src/PToolsPlugin.cpp
- src/plugins_3rdparty/ptools/src/PToolsPlugin.h
- src/plugins_3rdparty/ptools/src/PToolsTests.cpp
- src/plugins_3rdparty/ptools/src/PToolsTests.h
- src/plugins_3rdparty/sitecon/src/DIPropertiesSitecon.cpp
- src/plugins_3rdparty/sitecon/src/DIPropertiesSitecon.h
- src/plugins_3rdparty/sitecon/src/DIPropertiesTests.cpp
- src/plugins_3rdparty/sitecon/src/DIPropertiesTests.h
- src/plugins_3rdparty/sitecon/src/SiteconAlgorithm.cpp
- src/plugins_3rdparty/sitecon/src/SiteconAlgorithm.h
- src/plugins_3rdparty/sitecon/src/SiteconAlgorithmTests.cpp
- src/plugins_3rdparty/sitecon/src/SiteconAlgorithmTests.h
- src/plugins_3rdparty/sitecon/src/SiteconBuildDialogController.cpp
- src/plugins_3rdparty/sitecon/src/SiteconBuildDialogController.h
- src/plugins_3rdparty/sitecon/src/SiteconBuildWorker.cpp
- src/plugins_3rdparty/sitecon/src/SiteconIO.cpp
- src/plugins_3rdparty/sitecon/src/SiteconIO.h
- src/plugins_3rdparty/sitecon/src/SiteconIOWorkers.cpp
- src/plugins_3rdparty/sitecon/src/SiteconIOWorkers.h
- src/plugins_3rdparty/sitecon/src/SiteconPlugin.cpp
- src/plugins_3rdparty/sitecon/src/SiteconPlugin.h
- src/plugins_3rdparty/sitecon/src/SiteconQuery.cpp
- src/plugins_3rdparty/sitecon/src/SiteconQuery.h
- src/plugins_3rdparty/sitecon/src/SiteconSearchDialogController.cpp
- src/plugins_3rdparty/sitecon/src/SiteconSearchDialogController.h
- src/plugins_3rdparty/sitecon/src/SiteconSearchTask.cpp
- src/plugins_3rdparty/sitecon/src/SiteconSearchTask.h
- src/plugins_3rdparty/sitecon/src/SiteconSearchWorker.cpp
- src/plugins_3rdparty/sitecon/src/SiteconWorkers.h
- src/plugins_3rdparty/umuscle/src/MuscleAdapter.cpp
- src/plugins_3rdparty/umuscle/src/MuscleAdapter.h
- src/plugins_3rdparty/umuscle/src/MuscleAlignDialogController.cpp
- src/plugins_3rdparty/umuscle/src/MuscleAlignDialogController.h
- src/plugins_3rdparty/umuscle/src/MuscleParallel.cpp
- src/plugins_3rdparty/umuscle/src/MuscleParallel.h
- src/plugins_3rdparty/umuscle/src/MusclePlugin.cpp
- src/plugins_3rdparty/umuscle/src/MusclePlugin.h
- src/plugins_3rdparty/umuscle/src/MuscleTask.cpp
- src/plugins_3rdparty/umuscle/src/MuscleTask.h
- src/plugins_3rdparty/umuscle/src/MuscleUtils.cpp
- src/plugins_3rdparty/umuscle/src/MuscleUtils.h
- src/plugins_3rdparty/umuscle/src/MuscleWorkPool.cpp
- src/plugins_3rdparty/umuscle/src/MuscleWorkPool.h
- src/plugins_3rdparty/umuscle/src/MuscleWorker.cpp
- src/plugins_3rdparty/umuscle/src/MuscleWorker.h
- src/plugins_3rdparty/umuscle/src/ProfileToProfileWorker.cpp
- src/plugins_3rdparty/umuscle/src/ProfileToProfileWorker.h
- src/plugins_3rdparty/umuscle/src/TaskLocalStorage.cpp
- src/plugins_3rdparty/umuscle/src/TaskLocalStorage.h
- src/plugins_3rdparty/umuscle/src/refinehorizP.cpp
- src/plugins_3rdparty/umuscle/src/refinevertP.cpp
- src/plugins_3rdparty/umuscle/src/umuscle_tests/umuscleTests.cpp
- src/plugins_3rdparty/umuscle/src/umuscle_tests/umuscleTests.h
- src/plugins_3rdparty/variants/src/AssemblySamtoolsMpileup.cpp
- src/plugins_3rdparty/variants/src/AssemblySamtoolsMpileup.h
- src/plugins_3rdparty/variants/src/SamtoolMpileupWorker.cpp
- src/plugins_3rdparty/variants/src/SamtoolMpileupWorker.h
- src/plugins_3rdparty/variants/src/SamtoolsPlugin.cpp
- src/plugins_3rdparty/variants/src/SamtoolsPlugin.h
- src/plugins_checker/src/Main.cpp
- src/ugene_version.pri
- src/ugenecl/src/DumpHelpTask.cpp
- src/ugenecl/src/DumpHelpTask.h
- src/ugenecl/src/DumpLicenseTask.cpp
- src/ugenecl/src/DumpLicenseTask.h
- src/ugenecl/src/DumpVersionTask.cpp
- src/ugenecl/src/DumpVersionTask.h
- src/ugenecl/src/Main.cpp
- src/ugenecl/src/TaskStatusBar.cpp
- src/ugenecl/src/TaskStatusBar.h
- src/ugenecl/src/TestStarter.cpp
- src/ugenecl/src/TestStarter.h
- src/ugenem/src/SendReportDialog.cpp
- src/ugenem/src/SendReportDialog.h
- src/ugenem/src/Utils.cpp
- src/ugenem/src/Utils.h
- src/ugenem/src/main.cpp
- src/ugeneui/html/version_news_en.html
- src/ugeneui/html/version_news_ru.html
- + src/ugeneui/images/document.svg
- + src/ugeneui/images/file_share.svg
- + src/ugeneui/images/folder.svg
- + src/ugeneui/images/folder_shared.svg
- + src/ugeneui/images/group.svg
- src/ugeneui/src/Main.cpp
- src/ugeneui/src/app_settings/AppSettingsDialogController.cpp
- src/ugeneui/src/app_settings/AppSettingsDialogController.h
- src/ugeneui/src/app_settings/AppSettingsDialogTree.h
- src/ugeneui/src/app_settings/AppSettingsGUIImpl.cpp
- src/ugeneui/src/app_settings/AppSettingsGUIImpl.h
- src/ugeneui/src/app_settings/ResetSettingsMac.h
- src/ugeneui/src/app_settings/ResetSettingsMac.mm
- src/ugeneui/src/app_settings/directories_settings/DirectoriesSettingsGUIController.cpp
- src/ugeneui/src/app_settings/directories_settings/DirectoriesSettingsGUIController.h
- src/ugeneui/src/app_settings/format_settings/FormatSettingsGUIController.cpp
- src/ugeneui/src/app_settings/format_settings/FormatSettingsGUIController.h
- src/ugeneui/src/app_settings/logview_settings/LogSettingsGUIController.cpp
- src/ugeneui/src/app_settings/logview_settings/LogSettingsGUIController.h
- src/ugeneui/src/app_settings/network_settings/NetworkSettingsGUIController.cpp
- src/ugeneui/src/app_settings/network_settings/NetworkSettingsGUIController.h
- src/ugeneui/src/app_settings/resource_settings/ResourceSettingsGUIController.cpp
- src/ugeneui/src/app_settings/resource_settings/ResourceSettingsGUIController.h
- src/ugeneui/src/app_settings/user_apps_settings/UserApplicationsSettingsGUIController.cpp
- src/ugeneui/src/app_settings/user_apps_settings/UserApplicationsSettingsGUIController.h
- src/ugeneui/src/app_settings/user_apps_settings/UserApplicationsSettingsWidget.ui
- src/ugeneui/src/main_window/AboutDialogController.cpp
- src/ugeneui/src/main_window/AboutDialogController.h
- src/ugeneui/src/main_window/CheckUpdatesTask.cpp
- src/ugeneui/src/main_window/CheckUpdatesTask.h
- src/ugeneui/src/main_window/CreateDesktopShortcutTask.cpp
- src/ugeneui/src/main_window/CreateDesktopShortcutTask.h
- src/ugeneui/src/main_window/DockManagerImpl.cpp
- src/ugeneui/src/main_window/DockManagerImpl.h
- src/ugeneui/src/main_window/DockWidgetPainter.cpp
- src/ugeneui/src/main_window/DockWidgetPainter.h
- src/ugeneui/src/main_window/MDIManagerImpl.cpp
- src/ugeneui/src/main_window/MDIManagerImpl.h
- src/ugeneui/src/main_window/MainWindowImpl.cpp
- src/ugeneui/src/main_window/MainWindowImpl.h
- src/ugeneui/src/main_window/MenuManager.cpp
- src/ugeneui/src/main_window/MenuManager.h
- src/ugeneui/src/main_window/ShutdownTask.cpp
- src/ugeneui/src/main_window/ShutdownTask.h
- src/ugeneui/src/main_window/SplashScreen.cpp
- src/ugeneui/src/main_window/SplashScreen.h
- src/ugeneui/src/main_window/TmpDirChangeDialogController.cpp
- src/ugeneui/src/main_window/TmpDirChangeDialogController.h
- src/ugeneui/src/main_window/ToolBarManager.cpp
- src/ugeneui/src/main_window/ToolBarManager.h
- src/ugeneui/src/plugin_viewer/PluginViewerController.cpp
- src/ugeneui/src/plugin_viewer/PluginViewerController.h
- src/ugeneui/src/plugin_viewer/PluginViewerImpl.cpp
- src/ugeneui/src/plugin_viewer/PluginViewerImpl.h
- src/ugeneui/src/project_support/DocumentFormatSelectorController.cpp
- src/ugeneui/src/project_support/DocumentFormatSelectorController.h
- src/ugeneui/src/project_support/DocumentProviderSelectorController.cpp
- src/ugeneui/src/project_support/DocumentProviderSelectorController.h
- src/ugeneui/src/project_support/DocumentReadingModeSelectorController.cpp
- src/ugeneui/src/project_support/DocumentReadingModeSelectorController.h
- src/ugeneui/src/project_support/ExportProjectDialogController.cpp
- src/ugeneui/src/project_support/ExportProjectDialogController.h
- src/ugeneui/src/project_support/MultipleDocumentsReadingModeSelectorController.cpp
- src/ugeneui/src/project_support/MultipleDocumentsReadingModeSelectorController.h
- src/ugeneui/src/project_support/ProjectImpl.cpp
- src/ugeneui/src/project_support/ProjectImpl.h
- src/ugeneui/src/project_support/ProjectLoaderImpl.cpp
- src/ugeneui/src/project_support/ProjectLoaderImpl.h
- src/ugeneui/src/project_support/ProjectServiceImpl.cpp
- src/ugeneui/src/project_support/ProjectServiceImpl.h
- src/ugeneui/src/project_support/ProjectTasksGui.cpp
- src/ugeneui/src/project_support/ProjectTasksGui.h
- src/ugeneui/src/project_view/BuiltInObjectViews.cpp
- src/ugeneui/src/project_view/ProjectViewImpl.cpp
- src/ugeneui/src/project_view/ProjectViewImpl.h
- src/ugeneui/src/shtirlitz/Shtirlitz.cpp
- src/ugeneui/src/shtirlitz/Shtirlitz.h
- src/ugeneui/src/shtirlitz/StatisticalReportController.cpp
- src/ugeneui/src/shtirlitz/StatisticalReportController.h
- src/ugeneui/src/task_view/TaskStatusBar.cpp
- src/ugeneui/src/task_view/TaskStatusBar.h
- src/ugeneui/src/task_view/TaskViewController.cpp
- src/ugeneui/src/task_view/TaskViewController.h
- src/ugeneui/src/update/UgeneUpdater.cpp
- src/ugeneui/src/update/UgeneUpdater.h
- src/ugeneui/src/welcome_page/WelcomePageMdi.cpp
- src/ugeneui/src/welcome_page/WelcomePageMdi.h
- src/ugeneui/src/welcome_page/WelcomePageMdiController.cpp
- src/ugeneui/src/welcome_page/WelcomePageMdiController.h
- src/ugeneui/src/welcome_page/WelcomePageWidget.cpp
- src/ugeneui/src/welcome_page/WelcomePageWidget.h
- src/ugeneui/src/workspace/CloudStorageDockWidget.cpp
- src/ugeneui/src/workspace/CloudStorageDockWidget.h
- src/ugeneui/src/workspace/CloudStorageService.cpp
- src/ugeneui/src/workspace/CloudStorageService.h
- src/ugeneui/src/workspace/KeycloakAuthenticator.cpp
- src/ugeneui/src/workspace/KeycloakAuthenticator.h
- src/ugeneui/src/workspace/WebSocketClientService.cpp
- src/ugeneui/src/workspace/WebSocketClientService.h
- src/ugeneui/src/workspace/WorkspaceConnectionStatusIcon.cpp
- src/ugeneui/src/workspace/WorkspaceConnectionStatusIcon.h
- src/ugeneui/src/workspace/WorkspaceService.cpp
- src/ugeneui/src/workspace/WorkspaceService.h
- src/ugeneui/transl/russian.ts
- src/ugeneui/transl/turkish.ts
- src/ugeneui/ugeneui.qrc
- + tests/cmdline/common/external-tool-support/kraken2/negative/test_0001.xml
- + tests/cmdline/common/external-tool-support/kraken2/negative/test_0002.xml
- + tests/cmdline/common/external-tool-support/kraken2/test_0001.xml
- + tests/cmdline/common/external-tool-support/kraken2/test_0002.xml
- + tests/cmdline/common/external-tool-support/kraken2/test_0003.xml
- tests/cmdline_common_suite.xml
- tests/doc_format/gff/write/test_0001.xml
- + tests/doc_format/kraken_results/negative/test_0001.xml
- + tests/doc_format/kraken_results/negative/test_0002.xml
- + tests/doc_format/kraken_results/negative/test_0003.xml
- + tests/doc_format/kraken_results/negative/test_0004.xml
- + tests/doc_format/kraken_results/negative/test_0005.xml
- + tests/doc_format/kraken_results/negative/test_0006.xml
- + tests/doc_format/kraken_results/negative/test_0007.xml
- + tests/doc_format/kraken_results/negative/test_0008.xml
- + tests/doc_format/kraken_results/negative/test_0009.xml
- + tests/doc_format/kraken_results/negative/test_0010.xml
- + tests/doc_format/kraken_results/negative/test_0011.xml
- + tests/doc_format/kraken_results/negative/test_0012.xml
- + tests/doc_format/kraken_results/negative/test_0013.xml
- + tests/doc_format/kraken_results/negative/test_0014.xml
- + tests/doc_format/kraken_results/negative/test_0015.xml
- + tests/doc_format/kraken_results/negative/test_0016.xml
- + tests/doc_format/kraken_results/test_0001.xml
- + tests/doc_format/kraken_results/test_0002.xml


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ugene/-/compare/dd389595f47c142fcf91a1aa27c16c310136beb4...d4d681c3a5f1468d8343bb05e75b043f8492e4b4

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View it on GitLab: https://salsa.debian.org/med-team/ugene/-/compare/dd389595f47c142fcf91a1aa27c16c310136beb4...d4d681c3a5f1468d8343bb05e75b043f8492e4b4
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