[med-svn] [Git][med-team/seq-gen][master] 11 commits: Fix build with gcc-15

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / seq-gen


Commits:
f6862cd1 by Andreas Tille at 2025-12-03T16:13:04+01:00
Fix build with gcc-15

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f665b0db by Andreas Tille at 2025-12-03T16:13:57+01:00
d/watch: version=5

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26a21c12 by Andreas Tille at 2025-12-03T16:16:11+01:00
Close bug

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91846ffb by Andreas Tille at 2025-12-03T16:16:40+01:00
New upstream version 1.3.5
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54c98e77 by Andreas Tille at 2025-12-03T16:16:40+01:00
New upstream version

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d79d62fd by Andreas Tille at 2025-12-03T16:16:44+01:00
Update upstream source from tag 'upstream/1.3.5'

Update to upstream version '1.3.5'
with Debian dir 6909943f0805135cdda79d38b6858805b818c58c
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c6b3434d by Andreas Tille at 2025-12-03T16:16:44+01:00
Standards-Version: 4.7.2 (routine-update)

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55222085 by Andreas Tille at 2025-12-03T16:16:48+01:00
Use secure URI in Homepage field.

Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html

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1634fad6 by Andreas Tille at 2025-12-03T16:16:49+01:00
Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright).

Changes-By: lintian-brush

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96d918c3 by Andreas Tille at 2025-12-03T16:24:14+01:00
New upstream has gcc-15 fix; cleanup changelog

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18d34ea1 by Andreas Tille at 2025-12-03T16:25:38+01:00
Upload to unstable

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38 changed files:

- .gitignore
- − README
- + README.md
- debian/changelog
- debian/control
- debian/patches/fix_typos.patch
- debian/patches/makefile_vars.patch
- debian/rules
- debian/upstream/metadata
- debian/watch
- documentation/Seq-Gen.Manual.html
- − examples/seqs+trees.phy
- + manual.md
- source/Makefile
- source/aamodels.c
- source/aamodels.h
- source/eigen.c
- source/eigen.h
- source/evolve.c
- source/evolve.h
- source/gamma.c
- source/gamma.h
- source/global.c
- source/global.h
- source/model.c
- source/model.h
- source/nucmodels.c
- source/nucmodels.h
- source/progress.c
- source/progress.h
- + source/seq-gen
- source/seq-gen.c
- source/tree.h
- source/treefile.c
- source/treefile.h
- source/twister.c
- source/twister.h
- + test/ZIKV_100.newick.trees


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/seq-gen/-/compare/c4399b66bad131b0f2c76319878bb05651c3dcb6...18d34ea104aa960f2c56b0df1d0701c5668e09e8

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View it on GitLab: https://salsa.debian.org/med-team/seq-gen/-/compare/c4399b66bad131b0f2c76319878bb05651c3dcb6...18d34ea104aa960f2c56b0df1d0701c5668e09e8
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