[med-svn] [Git][med-team/genometester][master] Complite patch for changed upstream source

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / genometester


Commits:
ea15009d by Andreas Tille at 2025-12-11T22:10:28+01:00
Complite patch for changed upstream source

- - - - -


1 changed file:

- debian/patches/cross.patch


Changes:

=====================================
debian/patches/cross.patch
=====================================
@@ -29,39 +29,39 @@ Description: Fix C vs C++ confusion by rather calling CC for C code
  
  glistmaker: $(LISTMAKER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES)
 -	$(CXX) $(LISTMAKER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o glistmaker $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
-+	$(CC) $(LISTMAKER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o glistmaker $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
++	$(CC) $(LISTMAKER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o glistmaker $(LIBS) $(CFLAGS) $(AZ_FLAGS)
  
  glistquery: $(LISTQUERY_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES)
 -	$(CXX) $(LISTQUERY_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o glistquery $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
-+	$(CC) $(LISTQUERY_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o glistquery $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
++	$(CC) $(LISTQUERY_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o glistquery $(LIBS) $(CFLAGS) $(AZ_FLAGS)
  
  glistcompare: $(LISTCOMPARE_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES)
 -	$(CXX) $(LISTCOMPARE_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o glistcompare $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
-+	$(CC) $(LISTCOMPARE_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o glistcompare $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
++	$(CC) $(LISTCOMPARE_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o glistcompare $(LIBS) $(CFLAGS) $(AZ_FLAGS)
  
  gindexer: $(GINDEXER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES)
 -	$(CXX) $(GINDEXER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o gindexer $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
-+	$(CC) $(GINDEXER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o gindexer $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
++	$(CC) $(GINDEXER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o gindexer $(LIBS) $(CFLAGS) $(AZ_FLAGS)
  
  gmer_counter: $(GMER_COUNTER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES)
 -	$(CXX) $(GMER_COUNTER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o gmer_counter $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
-+	$(CC) $(GMER_COUNTER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o gmer_counter $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
++	$(CC) $(GMER_COUNTER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o gmer_counter $(LIBS) $(CFLAGS) $(AZ_FLAGS)
  
  gmer_caller: $(GMER_CALLER_SOURCES)
 -	$(CXX) $(GMER_CALLER_SOURCES) -o gmer_caller $(LIBS) $(CXXFLAGS) -Wall
-+	$(CC) $(GMER_CALLER_SOURCES) -o gmer_caller $(LIBS) $(CXXFLAGS) -Wall
++	$(CC) $(GMER_CALLER_SOURCES) -o gmer_caller $(LIBS) $(CFLAGS) -Wall
  
  gassembler: $(GASSEMBLER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES)
 -	$(CXX) $(GASSEMBLER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o gassembler $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
-+	$(CC) $(GASSEMBLER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o gassembler $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
++	$(CC) $(GASSEMBLER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o gassembler $(LIBS) $(CFLAGS) $(AZ_FLAGS)
  
  aleq: $(ALEQ_SOURCES)
 -	$(CXX) $(ALEQ_SOURCES) -o aleq $(LIBS) $(CXXFLAGS) -Wall
-+	$(CC) $(ALEQ_SOURCES) -o aleq $(LIBS) $(CXXFLAGS) -Wall
++	$(CC) $(ALEQ_SOURCES) -o aleq $(LIBS) $(CFLAGS) -Wall
  
  kmer_predictor: $(KMER_PREDICTOR_SOURCES)
 -	$(CXX) $(KMER_PREDICTOR_SOURCES)  $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o kmer_predictor $(LIBS) $(AZ_FLAGS) $(CXXFLAGS)
-+	$(CC) $(KMER_PREDICTOR_SOURCES)  $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o kmer_predictor $(LIBS) $(AZ_FLAGS) $(CXXFLAGS)
++	$(CC) $(KMER_PREDICTOR_SOURCES)  $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o kmer_predictor $(LIBS) $(AZ_FLAGS) $(CFLAGS)
  	
  clean: clean-custom
  	rm -f *.o $(BINS)



View it on GitLab: https://salsa.debian.org/med-team/genometester/-/commit/ea15009de4b175e1ae37943a0e82121af390a211

-- 
View it on GitLab: https://salsa.debian.org/med-team/genometester/-/commit/ea15009de4b175e1ae37943a0e82121af390a211
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