[med-svn] [Git][med-team/bedtools][master] 4 commits: d/watch: version=5

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / bedtools


Commits:
b1a58cf0 by Andreas Tille at 2025-12-24T14:48:27+01:00
d/watch: version=5

- - - - -
39756efd by Andreas Tille at 2025-12-24T14:57:47+01:00
Fix FTBFS with GNUMAKEFLAGS=--shuffle=random Closes: #1104751, #1105730

- - - - -
63346fed by Andreas Tille at 2025-12-24T14:58:12+01:00
Standards-Version: 4.7.3 (routine-update)

- - - - -
102cd0b5 by Andreas Tille at 2025-12-24T14:58:16+01:00
Remove Priority field to comply with Debian Policy 4.7.3 (routine- update)

- - - - -


5 changed files:

- debian/changelog
- debian/control
- + debian/patches/make_shuffle_random.patch
- debian/patches/series
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,17 @@
+bedtools (2.31.1+dfsg-3) UNRELEASED; urgency=medium
+
+  [ Andreas Tille ]
+  * d/watch: version=5
+  * Standards-Version: 4.7.3 (routine-update)
+  * Remove Priority field to comply with Debian Policy 4.7.3 (routine-
+    update)
+
+  [ Lucas Nussbaum ]
+  * Fix FTBFS with GNUMAKEFLAGS=--shuffle=random
+    Closes: #1104751, #1105730
+
+ -- Andreas Tille <tille at debian.org>  Wed, 24 Dec 2025 14:47:50 +0100
+
 bedtools (2.31.1+dfsg-2) unstable; urgency=medium
 
   * d/clean: new: remove test/getfasta/t.fa.gz.gzi. (Closes: #1043957)


=====================================
debian/control
=====================================
@@ -4,13 +4,12 @@ Uploaders: Charles Plessy <plessy at debian.org>,
            Andreas Tille <tille at debian.org>,
            Étienne Mollier <emollier at debian.org>
 Section: science
-Priority: optional
 Build-Depends: debhelper-compat (= 13),
                python3:any,
                zlib1g-dev,
                libbz2-dev,
                liblzma-dev
-Standards-Version: 4.6.2
+Standards-Version: 4.7.3
 Vcs-Browser: https://salsa.debian.org/med-team/bedtools
 Vcs-Git: https://salsa.debian.org/med-team/bedtools.git
 Homepage: https://github.com/arq5x/bedtools2


=====================================
debian/patches/make_shuffle_random.patch
=====================================
@@ -0,0 +1,16 @@
+Author: Lucas Nussbaum <lucas at debian.org>
+Description: Fix FTBFS with GNUMAKEFLAGS=--shuffle=random
+Bug-Debian: https://bugs.debian.org/1104751
+Last-Update: 2025-05-05
+
+--- a/Makefile
++++ b/Makefile
+@@ -177,6 +177,8 @@ include $(HTSDIR)/htslib.mk
+ # but ignores the directory's timestamp, which changes every time a .o file is written.
+ $(BUILT_OBJECTS): | $(OBJ_DIR)
+ 
++$(BUILT_OBJECTS): autoversion
++
+ $(BIN_DIR)/bedtools: autoversion $(BUILT_OBJECTS) $(HTSDIR)/libhts.a | $(BIN_DIR)
+ 	@echo "- Building main bedtools binary."
+ 	$(CCPREFIX) $(CC_WRAPPER) $(CXX) $(ALL_LDFLAGS) -o $(BIN_DIR)/bedtools $(BUILT_OBJECTS) $(HTSDIR)/libhts.a $(ALL_LIBS)


=====================================
debian/patches/series
=====================================
@@ -8,3 +8,4 @@ remove_barski_binding_site.png.patch
 hardening
 htsutil
 no_ulimit.patch
+make_shuffle_random.patch


=====================================
debian/watch
=====================================
@@ -1,4 +1,7 @@
-version=4
-opts="repacksuffix=+dfsg,dversionmangle=auto,repack,compression=xz" \
-	https://github.com/arq5x/bedtools2/tags \
-	(?:.*?/)?v?(\d[\d.]*)\.tar\.gz
+Version: 5
+
+Template: Github
+Owner: arq5x
+Project: bedtools2
+Dversion-Mangle: auto
+Repack-Suffix: +dfsg



View it on GitLab: https://salsa.debian.org/med-team/bedtools/-/compare/06c9b5e40b39283ea82f3e671b31c13658a94c9c...102cd0b57161f9d773eee33f9d3ef20c9a0cb235

-- 
View it on GitLab: https://salsa.debian.org/med-team/bedtools/-/compare/06c9b5e40b39283ea82f3e671b31c13658a94c9c...102cd0b57161f9d773eee33f9d3ef20c9a0cb235
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