[med-svn] [Git][med-team/beagle][master] 4 commits: New upstream version 241217

[Dylan Aïssi (@daissi)]

Dylan Aïssi pushed to branch master at Debian Med / beagle


Commits:
64cf178b by Dylan Aïssi at 2025-02-03T22:45:17+01:00
New upstream version 241217
- - - - -
3cd9005e by Dylan Aïssi at 2025-02-03T22:45:18+01:00
Update upstream source from tag 'upstream/241217'

Update to upstream version '241217'
with Debian dir c1e7b5f98b8d2760dac22ec4fa5bafe7c003c421
- - - - -
25014f05 by Dylan Aïssi at 2025-02-03T22:46:10+01:00
Bump debian/changelog

- - - - -
04b490df by Dylan Aïssi at 2025-02-03T22:48:44+01:00
Fix encoding

- - - - -


30 changed files:

- beagleutil/CompHapSegment.java
- blbutil/BitArray.java
- blbutil/BlockLineReader.java
- blbutil/FileIt.java
- blbutil/FileUtil.java
- blbutil/InputIt.java
- + blbutil/TriFunction.java
- blbutil/Utilities.java
- bref/AsIsBref3Writer.java
- bref/Bref3.java
- + bref/Bref3Header.java
- bref/Bref3It.java
- bref/Bref3Reader.java
- bref/CompressBref3Writer.java
- bref/SeqCoder3.java
- bref/UnBref3.java
- debian/changelog
- debian/upstream.docs/README
- imp/ImpStates.java
- imp/ImputedRecBuilder.java
- ints/PackedIntArray.java
- ints/UnsignedByteArray.java
- main/Main.java
- main/Par.java
- main/RunStats.java
- main/WindowWriter.java
- phase/BasicPhaseStates.java
- phase/FixedPhaseData.java
- phase/FwdPbwtPhaser.java
- phase/HmmUpdater.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/beagle/-/compare/0825db46986cc68df24cba56eb4066b4d066cab1...04b490df53a70d05c53b7955e7add5ad848773f5

-- 
View it on GitLab: https://salsa.debian.org/med-team/beagle/-/compare/0825db46986cc68df24cba56eb4066b4d066cab1...04b490df53a70d05c53b7955e7add5ad848773f5
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20250203/aa499ffe/attachment.htm>