[med-svn] [Git][med-team/seqan-raptor][master] 5 commits: d/control: Experimental rebuild using SeqAn 3.4.0-rc.3

[Enrico Seiler (@eseiler)]

Enrico Seiler pushed to branch master at Debian Med / seqan-raptor


Commits:
ed177b22 by Enrico Seiler at 2025-02-05T21:25:29+01:00
d/control: Experimental rebuild using SeqAn 3.4.0-rc.3

* Team upload.
* d/control: Experimental rebuild using SeqAn 3.4.0-rc.3

- - - - -
4d53c036 by Enrico Seiler at 2025-02-05T21:25:29+01:00
d/patches: Add patch for SeqAn 3.4.0-rc.3

- - - - -
2cd75b63 by Enrico Seiler at 2025-02-05T21:25:30+01:00
d/control: pkg-config has been superseded by pkgconf

- - - - -
ed3adb45 by Enrico Seiler at 2025-02-05T21:25:30+01:00
d/control: Standards-Version: 4.7.0

- - - - -
4e98454a by Enrico Seiler at 2025-02-05T21:25:31+01:00
ready for uploading to experimental

- - - - -


5 changed files:

- debian/changelog
- debian/control
- + debian/patches/debian_seqan340
- debian/patches/series
- debian/tests/control


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+seqan-raptor (3.0.1+ds-6) experimental; urgency=medium
+
+  * Team upload.
+  * d/control: Experimental rebuild using SeqAn 3.4.0-rc.3
+  * d/patches: Add patch for SeqAn 3.4.0-rc.3
+  * d/control: pkg-config has been superseded by pkgconf
+  * d/control: Standards-Version: 4.7.0
+
+ -- Enrico Seiler <enrico.seiler.debian at outlook.com>  Wed, 05 Feb 2025 18:39:10 +0100
+
 seqan-raptor (3.0.1+ds-5) unstable; urgency=medium
 
   * d/tests/run-unit-test: also use -DRAPTOR_NATIVE_BUILD=OFF here


=====================================
debian/control
=====================================
@@ -5,13 +5,13 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Michael R. Crusoe <crusoe at debian.org>
 Build-Depends: debhelper-compat (= 13),
                cmake,
-               libseqan3-dev (>= 3.3.0~rc.1),
+               libseqan3-dev (>= 3.4.0~rc.3),
                libgtest-dev,
                libxxhash-dev,
                libcereal-dev,
                libsimde-dev,
                libyaml-cpp-dev,
-               pkg-config,
+               pkgconf,
                doxygen <!nodoc>,
                cppreference-doc-en-html <!nodoc>,
                texlive-font-utils <!nodoc>,
@@ -21,7 +21,7 @@ Build-Depends: debhelper-compat (= 13),
                texlive-plain-generic <!nodoc>,
                texlive-fonts-recommended <!nodoc>,
                ghostscript <!nodoc>
-Standards-Version: 4.6.2
+Standards-Version: 4.7.0
 Vcs-Browser: https://salsa.debian.org/med-team/seqan-raptor
 Vcs-Git: https://salsa.debian.org/med-team/seqan-raptor.git
 Homepage: https://github.com/seqan/raptor


=====================================
debian/patches/debian_seqan340
=====================================
@@ -0,0 +1,30 @@
+From: Enrico Seiler <enrico.seiler.debian at outlook.com>
+Date: Wed, 5 Feb 2025 17:35:10 +0100
+Subject: Upgrade to SeqAn 3.4.0
+Forwarded: not-needed
+
+---
+ build_system/raptor-config.cmake | 3 +++
+ 1 file changed, 3 insertions(+)
+
+diff --git a/build_system/raptor-config.cmake b/build_system/raptor-config.cmake
+index 758f134..0950d7d 100644
+--- a/build_system/raptor-config.cmake
++++ b/build_system/raptor-config.cmake
+@@ -62,6 +62,8 @@
+
+ cmake_minimum_required (VERSION 3.4...3.12)
+
++set (CMAKE_CXX_STANDARD 23)
++
+ # ----------------------------------------------------------------------------
+ # Set initial variables
+ # ----------------------------------------------------------------------------
+@@ -160,6 +162,7 @@ if (RAPTOR_SUBMODULES_DIR)
+           ${RAPTOR_SUBMODULES_DIR}/submodules/*/include
+           ${RAPTOR_SUBMODULES_DIR}/*/src/include
+           ${RAPTOR_SUBMODULES_DIR}/simde/simde
++          /usr/include/seqan3/vendor
+     )
+     foreach (submodule ${submodules})
+         if (IS_DIRECTORY ${submodule})


=====================================
debian/patches/series
=====================================
@@ -4,3 +4,4 @@ debian_seqan3
 debian_xxhash
 debian_cppreference
 doxygen_update
+debian_seqan340


=====================================
debian/tests/control
=====================================
@@ -3,5 +3,5 @@ Depends: @, cwltool, python3-setuptools, nodejs
 Restrictions: allow-stderr
 
 Tests: run-unit-test
-Depends: @, cmake, g++, patch, libseqan3-dev, libyaml-cpp-dev, libxxhash-dev, pkg-config, libgtest-dev, libsimde-dev
+Depends: @, cmake, g++, patch, libseqan3-dev (>= 3.4.0~rc.3), libyaml-cpp-dev, libxxhash-dev, pkg-config, libgtest-dev, libsimde-dev
 Restrictions: allow-stderr



View it on GitLab: https://salsa.debian.org/med-team/seqan-raptor/-/compare/c344445995b67a280964d1303d531da7412f7e6a...4e98454a173c5c4d74b99b3dd1981a4f14646b2c

-- 
View it on GitLab: https://salsa.debian.org/med-team/seqan-raptor/-/compare/c344445995b67a280964d1303d531da7412f7e6a...4e98454a173c5c4d74b99b3dd1981a4f14646b2c
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