[med-svn] [Git][med-team/plink2][upstream] New upstream version 2.00~a6.9-250129+dfsg

[Dylan Aïssi (@daissi)]

Dylan Aïssi pushed to branch upstream at Debian Med / plink2


Commits:
57775e20 by Dylan Aïssi at 2025-02-07T15:41:06+01:00
New upstream version 2.00~a6.9-250129+dfsg
- - - - -


30 changed files:

- Makefile.src
- Python/MANIFEST.in
- Python/README.md
- Python/pyproject.toml
- Python/python_api.txt
- Python/setup.py
- Python/src/pgenlib/pgenlib.pyx
- Python/tests/test_pgenlib.py
- + Tests/TEST_DOSAGE_ROUND_TRIP/.gitignore
- + Tests/TEST_DOSAGE_ROUND_TRIP/run_tests.sh
- + Tests/TEST_EXTRACT_CHR/.gitignore
- + Tests/TEST_EXTRACT_CHR/run_tests.sh
- + Tests/TEST_EXTRACT_CHR/simulate.txt
- + Tests/TEST_MAF_FILTER/.gitignore
- + Tests/TEST_MAF_FILTER/run_tests.sh
- + Tests/TEST_MAF_FILTER/simulate.txt
- + Tests/TEST_ONE_WAY_EXPORT/.gitignore
- + Tests/TEST_ONE_WAY_EXPORT/all_ploidy.pgen
- + Tests/TEST_ONE_WAY_EXPORT/all_ploidy.psam
- + Tests/TEST_ONE_WAY_EXPORT/all_ploidy.pvar.zst
- + Tests/TEST_ONE_WAY_EXPORT/plink2_test.phased.phy.want.zst
- + Tests/TEST_ONE_WAY_EXPORT/plink2_test.phy.want.zst
- + Tests/TEST_ONE_WAY_EXPORT/plink2_test.raw.want.zst
- + Tests/TEST_ONE_WAY_EXPORT/run_tests.sh
- + Tests/TEST_PGEN_FREQ/.gitignore
- + Tests/TEST_PGEN_FREQ/run_tests.sh
- + Tests/TEST_PGEN_FREQ/simulate.txt
- + Tests/TEST_PHASED_VCF/.gitignore
- + Tests/TEST_PHASED_VCF/1kg_phase3_chr21_start.vcf.gz
- + Tests/TEST_PHASED_VCF/glm_compare.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/plink2/-/commit/57775e208990a350853fb0c42af643e2ef2cbd79

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View it on GitLab: https://salsa.debian.org/med-team/plink2/-/commit/57775e208990a350853fb0c42af643e2ef2cbd79
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