[med-svn] [Git][med-team/toil][master] 16 commits: New upstream version 8.0.0

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / toil


Commits:
5ac7c535 by Michael R. Crusoe at 2025-02-13T08:43:57+01:00
New upstream version 8.0.0
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b5fb9b02 by Michael R. Crusoe at 2025-02-13T08:43:57+01:00
New upstream version

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bb29127b by Michael R. Crusoe at 2025-02-13T08:44:05+01:00
Update upstream source from tag 'upstream/8.0.0'

Update to upstream version '8.0.0'
with Debian dir a551f7d4c542493a833e1bd903436c3d7e480e1d
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66209bd8 by Michael R. Crusoe at 2025-02-13T08:44:10+01:00
Remove duplicate line from changelog.

Changes-By: lintian-brush

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2434e877 by Michael R. Crusoe at 2025-02-13T09:28:14+01:00
Refreshed patches; removed "skip-mypy-boto3" and "python3.12- syntax.patch" as they are no longer needed.

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859f9784 by Michael R. Crusoe at 2025-02-13T09:28:14+01:00
Added patch to remove the restrictions on the psutil Python package version.

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b72d78c0 by Michael R. Crusoe at 2025-02-13T12:35:58+01:00
Updated the fix-tests patch to fix more tests.

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e23862a4 by Michael R. Crusoe at 2025-02-13T12:35:58+01:00
d/control: cwl-utils is needed for the tests

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7b43abe0 by Michael R. Crusoe at 2025-02-13T17:22:40+01:00
Added patch with a minimal PEP-517 pyproject.toml, to improve how we run the tests.

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c85ec6e9 by Michael R. Crusoe at 2025-02-13T17:22:40+01:00
d/rules: simplify

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a7a58c3e by Michael R. Crusoe at 2025-02-13T17:22:40+01:00
d/rules: skip manual page building in when the "nodoc" build profile is active.

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25b25d8a by Michael R. Crusoe at 2025-02-13T17:22:40+01:00
Switch autopkgtest to autopkgtest-pkg-pybuild

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2f492fc9 by Michael R. Crusoe at 2025-02-13T17:22:40+01:00
d/TODO: removed several completed items.

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38cc9947 by Michael R. Crusoe at 2025-02-13T17:25:16+01:00
d/toil.lintian-overrides: removed, no longer applicable

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7ed375e7 by Michael R. Crusoe at 2025-02-13T17:26:10+01:00
fixup Added patch with a minimal PEP-517 pyproject.toml, to improve how we run the tests

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d01104ff by Michael R. Crusoe at 2025-02-13T18:12:47+01:00
WIP

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30 changed files:

- + .git-blame-ignore-revs
- .github/PULL_REQUEST_TEMPLATE.md
- .github/dependabot.yml
- − .github/workflows/autoupdate.yaml
- .gitignore
- .gitlab-ci.yml
- Makefile
- contrib/admin/cleanup_aws_resources.py
- contrib/admin/mypy-with-ignore.py
- contrib/mypy-stubs/configargparse/__init__.pyi
- contrib/mypy-stubs/configargparse/configargparse.pyi
- contrib/mypy-stubs/dill/_dill.pyi
- contrib/mypy-stubs/pubsub/core/topictreetraverser.pyi
- contrib/slurm-test/slurm_test.sh
- contrib/toil-ci-prebake/Dockerfile
- debian/TODO
- debian/changelog
- debian/control
- debian/manpages
- debian/patches/accept_debian_packaged_docker_version.patch
- debian/patches/atomic_copy_as_alternative.patch
- debian/patches/fix_tests
- debian/patches/needs_aws-proxyfix
- debian/patches/no_galaxy_lib
- + debian/patches/pyproject.toml
- − debian/patches/python3.12-syntax.patch
- debian/patches/series
- debian/patches/setting_version.patch
- − debian/patches/skip-mypy-boto3
- debian/patches/soften-configargparser-deps


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/274ed606059d0fa73e38c9dfca4ad1bb5f8d0ab1...d01104ffbcb8907adfbf06986e8827f80c5bf83d

-- 
View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/274ed606059d0fa73e38c9dfca4ad1bb5f8d0ab1...d01104ffbcb8907adfbf06986e8827f80c5bf83d
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