[med-svn] [Git][med-team/python-bcbio-gff][master] remove six from test

[Alexandre Detiste (@detiste-guest)]

Alexandre Detiste pushed to branch master at Debian Med / python-bcbio-gff


Commits:
e4cbc23b by Alexandre Detiste at 2025-02-20T23:46:23+01:00
remove six from test

- - - - -


1 changed file:

- debian/tests/test_GFFSeqIOFeatureAdder.py


Changes:

=====================================
debian/tests/test_GFFSeqIOFeatureAdder.py
=====================================
@@ -5,8 +5,7 @@ import os
 import unittest
 import pprint
 
-import six
-from six import StringIO
+from io import StringIO
 
 from Bio import SeqIO
 from BCBio import GFF
@@ -146,9 +145,6 @@ class GFF3Test(unittest.TestCase):
             assert pc_map == gff_examiner.parent_child_map(handle)
 
         with open(self._test_gff_file, "rb") as handle:
-            if six.PY2:
-                assert pc_map == gff_examiner.parent_child_map(handle)
-            else:
                 try:
                     gff_examiner.parent_child_map(handle)
                 except TypeError as e:
@@ -333,7 +329,7 @@ class GFF3Test(unittest.TestCase):
         """Handle GFF3 files with keys and no values.
         """
         tfile = os.path.join(self._test_dir, "glimmer_nokeyval.gff3")
-        rec = six.next(GFF.parse(tfile))
+        rec = next(GFF.parse(tfile))
         f1, f2 = rec.features
         assert f1.qualifiers['ID'] == ['GL0000006']
         assert len(f1.sub_features) == 2
@@ -354,7 +350,7 @@ class GFF3Test(unittest.TestCase):
         """
         fname = os.path.join(self._test_dir, "trans_splicing.gff3")
         with open(fname) as in_handle:
-            rec = six.next(GFF.parse(in_handle))
+            rec = next(GFF.parse(in_handle))
             assert len(rec.features) == 2
             assert rec.features[0].id == "gene83"
             assert len(rec.features[0].sub_features) == 2



View it on GitLab: https://salsa.debian.org/med-team/python-bcbio-gff/-/commit/e4cbc23bf80dd741b1e936c94e02e692d32dad56

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View it on GitLab: https://salsa.debian.org/med-team/python-bcbio-gff/-/commit/e4cbc23bf80dd741b1e936c94e02e692d32dad56
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