[med-svn] [Git][med-team/emmax][master] 5 commits: d/control: emmax breaks libatlas3-base.

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / emmax


Commits:
048e41f7 by Étienne Mollier at 2025-07-13T13:31:41+02:00
d/control: emmax breaks libatlas3-base.

The libatlas3-base package has been removed from trixie, but apt still
tries to preserve the obsolete package instead of upgrading emmax.

Closes: #1109178

- - - - -
dfd1e53d by Étienne Mollier at 2025-07-13T13:33:47+02:00
d/control: fix duplicate first name of uploader.

- - - - -
c4165c1a by Étienne Mollier at 2025-07-13T13:34:16+02:00
d/control: declare compliance to standards version 4.7.2.

- - - - -
41c5c801 by Étienne Mollier at 2025-07-13T13:35:47+02:00
d/p/*.patch: normalize Last-Update timestamp.

- - - - -
8642b019 by Étienne Mollier at 2025-07-13T13:40:27+02:00
d/changelog: ready for team upload to unstable.

- - - - -


9 changed files:

- debian/changelog
- debian/control
- debian/patches/aborts.patch
- debian/patches/clean.patch
- debian/patches/dynamic.patch
- debian/patches/hardening.patch
- debian/patches/install.patch
- debian/patches/logfile.patch
- debian/patches/syntax.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,16 @@
+emmax (0~beta.20100307-6) unstable; urgency=medium
+
+  * Team upload.
+  * d/control: emmax breaks libatlas3-base.
+    The libatlas3-base package has been removed from trixie, but apt still
+    tries to preserve the obsolete package instead of upgrading emmax.
+    (Closes: #1109178)
+  * d/control: fix duplicate first name of uploader.
+  * d/control: declare compliance to standards version 4.7.2.
+  * d/p/*.patch: normalize Last-Update timestamp.
+
+ -- Étienne Mollier <emollier at debian.org>  Sun, 13 Jul 2025 13:36:34 +0200
+
 emmax (0~beta.20100307-5) unstable; urgency=medium
 
   * Put libblas-dev as first alternative to be more portable


=====================================
debian/control
=====================================
@@ -1,6 +1,6 @@
 Source: emmax
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: SteffenSteffen Moeller <moeller at debian.org>,
+Uploaders: Steffen Moeller <moeller at debian.org>,
            Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
@@ -8,7 +8,7 @@ Build-Depends: debhelper-compat (= 13),
                libblas-dev | libopenblas-dev | libblas.so,
                liblapacke-dev,
                zlib1g-dev
-Standards-Version: 4.6.2
+Standards-Version: 4.7.2
 Vcs-Browser: https://salsa.debian.org/med-team/emmax
 Vcs-Git: https://salsa.debian.org/med-team/emmax.git
 Homepage: http://genome.sph.umich.edu/wiki/EMMAX
@@ -18,6 +18,7 @@ Package: emmax
 Architecture: any
 Depends: ${shlibs:Depends},
          ${misc:Depends}
+Breaks: libatlas3-base (<< 3.10.3-13)
 Description: genetic mapping considering population structure
  EMMAX is a statistical test for large scale human or model organism
  association mapping accounting for the sample structure. In addition


=====================================
debian/patches/aborts.patch
=====================================
@@ -1,5 +1,5 @@
 Author: Steffen Moeller
-Last-Update: 2013-06-11 09:09:19 +0000
+Last-Update: 2013-06-11
 Description: Clean exit when no options are given
 
 Index: emmax-0~beta.20100307/emmax-kin.c


=====================================
debian/patches/clean.patch
=====================================
@@ -1,5 +1,5 @@
 Author: Steffen Moeller
-Last-Update: 2013-06-11 09:09:19 +0000
+Last-Update: 2013-06-11
 Description: Proper cleaning
 
 Index: emmax-0~beta.20100307/makefile


=====================================
debian/patches/dynamic.patch
=====================================
@@ -1,5 +1,5 @@
 Author: Steffen Moeller
-Last-Update: 2013-06-11 09:09:19 +0000
+Last-Update: 2013-06-11
 Description: Dynamic linking
 
 Index: emmax-0~beta.20100307/makefile


=====================================
debian/patches/hardening.patch
=====================================
@@ -1,5 +1,5 @@
 Author: Andreas Tille <tille at debian.org>
-Last-Update: Wed, 20 Mar 2019 18:28:20 +0100
+Last-Update: 2019-03-20
 Description: Propagate hardening options (unfortunately this does not help)
 
 --- a/makefile


=====================================
debian/patches/install.patch
=====================================
@@ -1,5 +1,5 @@
 Author: Steffen Moeller
-Last-Update: 2013-06-11 09:09:19 +0000
+Last-Update: 2013-06-11
 Description: Proper install target
 
 Index: emmax-0~beta.20100307/makefile


=====================================
debian/patches/logfile.patch
=====================================
@@ -1,5 +1,5 @@
 Author: Steffen Moeller
-Last-Update: 2013-06-11 09:09:19 +0000
+Last-Update: 2013-06-11
 Description: Log only if file pointer exists
 
 Index: emmax-0~beta.20100307/emmax.c


=====================================
debian/patches/syntax.patch
=====================================
@@ -1,5 +1,5 @@
 Author: Andreas Tille <tille at debian.org>
-Last-Update: Tue, 28 Nov 2023 17:29:11 +0100
+Last-Update: 2023-11-28
 Description: Suppress warnings to clean up build log
 
 --- a/emmax.c



View it on GitLab: https://salsa.debian.org/med-team/emmax/-/compare/6c77b38aa3e900907113409431668039607f32d7...8642b019df6f1626993543fc02303c71d4344c41

-- 
View it on GitLab: https://salsa.debian.org/med-team/emmax/-/compare/6c77b38aa3e900907113409431668039607f32d7...8642b019df6f1626993543fc02303c71d4344c41
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20250713/f48b4950/attachment-0001.htm>