[med-svn] [Git][med-team/bitseq][upstream] 2 commits: created gbp.conf

[harish chavre (@Harish1)]

harish chavre pushed to branch upstream at Debian Med / bitseq


Commits:
8927d2e0 by Harish chavre at 2025-06-17T05:09:08+00:00
created gbp.conf

- - - - -
5b46266b by Harish chavre at 2025-06-17T05:11:02+00:00
New upstream version 0.7.5+dfsg
- - - - -


9 changed files:

- + debian-tests-data/Reads.fastq
- + debian-tests-data/Ref.fasta
- + debian-tests-data/index.1.ebwt
- + debian-tests-data/index.2.ebwt
- + debian-tests-data/index.3.ebwt
- + debian-tests-data/index.4.ebwt
- + debian-tests-data/index.rev.1.ebwt
- + debian-tests-data/index.rev.2.ebwt
- + debian-tests-data/out.sam


Changes:

=====================================
debian-tests-data/Reads.fastq
=====================================
@@ -0,0 +1,8 @@
+ at read1
+ACGTACGTACGT
++
+IIIIIIIIIIII
+ at read2
+ACGTACGTACGT
++
+JJJJJJJJJJJJ


=====================================
debian-tests-data/Ref.fasta
=====================================
@@ -0,0 +1,2 @@
+>ref
+ATGCTAGCATACGACTACAGCATACAGCATCAGACTACGACATCAGACTACAGCATACAGCAATACGACTACAGCATACGACTACAGCATCAGATGCTACGCAGACTACGACATCAGACTACAGCATACGACATCAGACTACTACAGACACAGACACGACGACGACGACTACGACACGACGACTACATCAGACGACGACAGCAGCAGCGACAGCAGACGACATACGACAGCATACGACGACAGACATCAGACGACGACGACGACGACGACGACGACCAGACGCATCAGCAGACACGACGAAAAAAAGGAGCATCAGCA


=====================================
debian-tests-data/index.1.ebwt
=====================================
Binary files /dev/null and b/debian-tests-data/index.1.ebwt differ


=====================================
debian-tests-data/index.2.ebwt
=====================================
Binary files /dev/null and b/debian-tests-data/index.2.ebwt differ


=====================================
debian-tests-data/index.3.ebwt
=====================================
Binary files /dev/null and b/debian-tests-data/index.3.ebwt differ


=====================================
debian-tests-data/index.4.ebwt
=====================================
Binary files /dev/null and b/debian-tests-data/index.4.ebwt differ


=====================================
debian-tests-data/index.rev.1.ebwt
=====================================
Binary files /dev/null and b/debian-tests-data/index.rev.1.ebwt differ


=====================================
debian-tests-data/index.rev.2.ebwt
=====================================
Binary files /dev/null and b/debian-tests-data/index.rev.2.ebwt differ


=====================================
debian-tests-data/out.sam
=====================================
@@ -0,0 +1,5 @@
+ at HD	VN:1.0	SO:unsorted
+ at SQ	SN:ref	LN:318
+ at PG	ID:Bowtie	VN:1.3.1	CL:"/usr/bin/bowtie-align-s --wrapper basic-0 -q -v 3 --all -m 100 --sam index Reads.fastq -S out.sam"
+read1	4	*	0	0	*	*	0	0	ACGTACGTACGT	IIIIIIIIIIII	XM:i:0
+read2	4	*	0	0	*	*	0	0	ACGTACGTACGT	JJJJJJJJJJJJ	XM:i:0



View it on GitLab: https://salsa.debian.org/med-team/bitseq/-/compare/ebcd5e842eff36228eb7742306a08fa2b01c6cfa...5b46266bfcba234e735f51877127e099a0cc9da6

-- 
View it on GitLab: https://salsa.debian.org/med-team/bitseq/-/compare/ebcd5e842eff36228eb7742306a08fa2b01c6cfa...5b46266bfcba234e735f51877127e099a0cc9da6
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