[med-svn] [Git][med-team/bitseq][master] Add README.debian explaining use of precomputed test data in autopkgtest

[harish chavre (@Harish1)]

harish chavre pushed to branch master at Debian Med / bitseq


Commits:
5c981f1c by Harish chavre at 2025-06-21T08:52:57+00:00
Add README.debian explaining use of precomputed test data in autopkgtest

- - - - -


1 changed file:

- + debian/tests/README.Debian


Changes:

=====================================
debian/tests/README.Debian
=====================================
@@ -0,0 +1,22 @@
+Debian Tests Data
+=================
+
+The autopkgtest for bitseq was updated to use pregenerated test
+data instead of dynamically running bowtie.
+
+This is necessary because bowtie is not available on 32-bit
+architectures (such as i386, armel, armhf). With this change,
+the test is skipped on those architectures and runs normally
+elsewhere.
+
+The dataset is shipped via the 'debian-tests-data' component
+tarball. It contains Bowtie index files and a SAM alignment file
+required to test bitseq.
+
+To regenerate the dataset manually on a 64-bit machine:
+
+    bowtie-build -f Ref.fasta index
+    bowtie -q -v 3 --all -m 100 --sam index Reads.fastq -S out.sam
+
+Make sure bowtie is installed and available in your PATH.
+



View it on GitLab: https://salsa.debian.org/med-team/bitseq/-/commit/5c981f1cd518e864a254e793f193fe31e951d43c

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View it on GitLab: https://salsa.debian.org/med-team/bitseq/-/commit/5c981f1cd518e864a254e793f193fe31e951d43c
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