[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille (@tille) gitlab at salsa.debian.org
Sun Jun 22 02:44:05 BST 2025



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
2492475e by Andreas Tille at 2025-06-22T01:43:58+00:00
automatic update

- - - - -


4 changed files:

- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
- python-team-tests.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,13 +1,13 @@
-Last-Update: Sat, 21 Jun 2025 13:42:04 +0000
+Last-Update: Sun, 22 Jun 2025 01:42:04 +0000
 
  Source                        | Vote   | Tasks                                      |                                 Tags                                 
 -------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
  dicomscope                    |     30 | {imaging}                                  | 
  orthanc-gdcm                  |     17 | {imaging}                                  | 
- oscar                         |     16 | {data,tools,practice}                      | 
+ oscar                         |     16 | {tools,practice,data}                      | 
  mrtrix3                       |     14 | {imaging}                                  | 
  gnumed-server                 |     11 | {covid-19,practice}                        | 
- king                          |     11 | {typesetting,imaging}                      | 
+ king                          |     11 | {imaging,typesetting}                      | 
  pixelmed                      |     11 | {imaging}                                  | 
  orthanc-mysql                 |     10 | {imaging}                                  | 
  sight                         |     10 | {imaging}                                  | 
@@ -20,7 +20,7 @@ Last-Update: Sat, 21 Jun 2025 13:42:04 +0000
  libminc                       |      6 | {imaging-dev}                              | 
  mia                           |      5 | {imaging}                                  | 
  insighttoolkit5               |      4 | {imaging-dev}                              | 
- beast-mcmc                    |      3 | {bio,bio-phylogeny}                        | 
+ beast-mcmc                    |      3 | {bio-phylogeny,bio}                        | 
  biojava6-live                 |      3 | {bio-dev}                                  | 
  biojava-live                  |      3 | {bio-dev}                                  | 
  getdata                       |      3 | {bio}                                      | 
@@ -35,14 +35,14 @@ Last-Update: Sat, 21 Jun 2025 13:42:04 +0000
  fastml                        |      2 | {bio}                                      | 
  ipig                          |      2 | {bio}                                      | 
  libdivsufsort                 |      2 | {bio-dev}                                  | 
- plasmidid                     |      2 | {covid-19,bio}                             | 
+ plasmidid                     |      2 | {bio,covid-19}                             | 
  rambo-k                       |      2 | {bio}                                      | 
  tracetuner                    |      2 | {bio}                                      | 
  blimps                        |      1 | {bio}                                      | 
  brig                          |      1 | {bio}                                      | 
  ctn                           |      1 | {imaging-dev}                              | 
  cufflinks                     |      1 | {cloud,bio}                                | 
- dextractor                    |      1 | {bio,covid-19}                             | 
+ dextractor                    |      1 | {covid-19,bio}                             | 
  eegdev                        |      1 | {imaging-dev}                              | 
  emboss-explorer               |      1 | {bio}                                      | 
  hinge                         |      1 | {bio}                                      | 
@@ -54,24 +54,24 @@ Last-Update: Sat, 21 Jun 2025 13:42:04 +0000
  libgenome                     |      1 | {bio-dev}                                  | 
  libpal-java                   |      1 | {bio-dev}                                  | 
  librg-utils-perl              |      1 | {bio}                                      | 
- melting                       |      1 | {cloud,bio}                                | 
- mhap                          |      1 | {bio,bio-ngs}                              | 
+ melting                       |      1 | {bio,cloud}                                | 
+ mhap                          |      1 | {bio-ngs,bio}                              | 
  ncbi-vdb                      |      1 | {bio-dev}                                  | 
  papyrus                       |      1 | {imaging-dev}                              | 
- phyutility                    |      1 | {cloud,bio}                                | 
+ phyutility                    |      1 | {bio,cloud}                                | 
  proalign                      |      1 | {bio-phylogeny,bio}                        | 
  python-seqcluster             |      1 | {bio-dev,covid-19}                         | 
  runcircos-gui                 |      1 | {bio}                                      | 
  seq-gen                       |      1 | {bio}                                      | 
  sga                           |      1 | {bio}                                      | 
- spread-phy                    |      1 | {bio,bio-phylogeny}                        | 
+ spread-phy                    |      1 | {bio-phylogeny,bio}                        | 
  staden                        |      1 | {bio}                                      | 
  surankco                      |      1 | {bio}                                      | 
  surpyvor                      |      1 | {bio}                                      | 
- thesias                       |      1 | {bio,covid-19}                             | 
- tophat-recondition            |      1 | {covid-19,bio}                             | 
+ thesias                       |      1 | {covid-19,bio}                             | 
+ tophat-recondition            |      1 | {bio,covid-19}                             | 
  treeview                      |      1 | {bio-phylogeny,bio}                        | 
- varscan                       |      1 | {covid-19,bio}                             | 
+ varscan                       |      1 | {bio,covid-19}                             | 
  xdffileio                     |      1 | {imaging-dev}                              | 
  acedb                         |      0 | {cloud,bio}                                | 
  bambamc                       |      0 | {bio-dev}                                  | 
@@ -81,8 +81,8 @@ Last-Update: Sat, 21 Jun 2025 13:42:04 +0000
  capsule-maven-nextflow        |      0 | {bio-dev}                                  | 
  ctffind                       |      0 | {bio}                                      | 
  embassy-domainatrix           |      0 | {cloud,bio}                                | 
- embassy-domalign              |      0 | {bio,cloud}                                | 
- embassy-domsearch             |      0 | {cloud,bio}                                | 
+ embassy-domalign              |      0 | {cloud,bio}                                | 
+ embassy-domsearch             |      0 | {bio,cloud}                                | 
  fis-gtm                       |      0 | {his}                                      | 
  gatk-bwamem                   |      0 | {bio-dev}                                  | 
  gatk-fermilite                |      0 | {bio-dev}                                  | 
@@ -101,7 +101,7 @@ Last-Update: Sat, 21 Jun 2025 13:42:04 +0000
  libhmsbeagle                  |      0 | {bio-dev}                                  | 
  libics                        |      0 | {covid-19,imaging-dev}                     | 
  libjloda-java                 |      0 | {bio-dev}                                  | 
- libmaus2                      |      0 | {covid-19,bio-dev}                         | 
+ libmaus2                      |      0 | {bio-dev,covid-19}                         | 
  libmems                       |      0 | {bio-dev}                                  | 
  libmialm                      |      0 | {imaging-dev}                              | 
  libmuscle                     |      0 | {bio-dev}                                  | 
@@ -137,7 +137,7 @@ Last-Update: Sat, 21 Jun 2025 13:42:04 +0000
  rdp-alignment                 |      0 | {bio}                                      | 
  rdp-classifier                |      0 | {bio}                                      | 
  resfinder-db                  |      0 | {bio}                                      | 
- rtax                          |      0 | {bio,cloud}                                | 
+ rtax                          |      0 | {cloud,bio}                                | 
  saint                         |      0 | {bio}                                      | 
  savvy                         |      0 | {bio-dev}                                  | 
  savvy                         |      0 | {bio}                                      | 
@@ -146,14 +146,14 @@ Last-Update: Sat, 21 Jun 2025 13:42:04 +0000
  sift                          |      0 | {bio}                                      | 
  sight                         |      0 | {imaging-dev}                              | 
  skesa                         |      0 | {bio}                                      | 
- smrtanalysis                  |      0 | {bio,covid-19}                             | 
+ smrtanalysis                  |      0 | {covid-19,bio}                             | 
  soapaligner                   |      0 | {bio}                                      | 
  soapsnp                       |      0 | {bio}                                      | 
  sprai                         |      0 | {bio}                                      | 
  srf                           |      0 | {bio-dev}                                  | 
  suitename                     |      0 | {bio}                                      | 
  trace2dbest                   |      0 | {bio}                                      | 
- vienna-rna                    |      0 | {bio,covid-19}                             | 
+ vienna-rna                    |      0 | {covid-19,bio}                             | 
  xxsds-dynamic                 |      0 | {bio-dev}                                  | 
  sideretro                     |     -1 | {bio}                                      | 
  tipp                          |     -1 | {bio,covid-19}                             | 


=====================================
debian-science-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sat, 21 Jun 2025 13:42:08 +0000
+Last-Update: Sun, 22 Jun 2025 01:42:09 +0000
 
        Source                              | Vote   |             Tasks                                                   |                        Tags                         
 -------------------------------------------+--------+---------------------------------------------------------------------+-----------------------------------------------------
@@ -25,7 +25,7 @@ Last-Update: Sat, 21 Jun 2025 13:42:08 +0000
  bossa                                     |     19 | {devices}                                                           | 
  grads                                     |     19 | {meteorology}                                                       | 
  sat4j                                     |     19 | {logic}                                                             | 
- fftw                                      |     18 | {mathematics-dev,physics-dev,meteorology-dev}                       | 
+ fftw                                      |     18 | {meteorology-dev,physics-dev,mathematics-dev}                       | 
  guiqwt                                    |     18 | {numericalcomputation,viewing}                                      | 
  picosat                                   |     18 | {logic}                                                             | 
  setzer                                    |     18 | {typesetting}                                                       | 
@@ -43,15 +43,15 @@ Last-Update: Sat, 21 Jun 2025 13:42:08 +0000
  iml                                       |     12 | {mathematics-dev}                                                   | 
  libhomfly                                 |     12 | {mathematics-dev}                                                   | 
  teem                                      |     12 | {imageanalysis}                                                     | 
- coinor-symphony                           |     11 | {logic,mathematics,numericalcomputation}                            | 
- lxi-tools                                 |     11 | {engineering,dataacquisition}                                       | 
+ coinor-symphony                           |     11 | {mathematics,numericalcomputation,logic}                            | 
+ lxi-tools                                 |     11 | {dataacquisition,engineering}                                       | 
  eccodes                                   |     10 | {meteorology-dev}                                                   | 
  feedgnuplot                               |     10 | {viewing}                                                           | 
  form                                      |     10 | {mathematics}                                                       | 
  libm4rie                                  |     10 | {mathematics-dev}                                                   | 
  matlab-support                            |     10 | {mathematics,numericalcomputation}                                  | 
  ncl                                       |     10 | {meteorology-dev}                                                   | 
- python-escript                            |     10 | {numericalcomputation,simulations,engineering}                      | 
+ python-escript                            |     10 | {numericalcomputation,engineering,simulations}                      | 
  geg                                       |      9 | {viewing}                                                           | 
  pcl                                       |      9 | {robotics-dev}                                                      | 
  python-cdo                                |      9 | {meteorology}                                                       | 
@@ -63,14 +63,14 @@ Last-Update: Sat, 21 Jun 2025 13:42:08 +0000
  libccp4                                   |      7 | {nanoscale-physics-dev}                                             | 
  libzn-poly                                |      7 | {mathematics-dev}                                                   | 
  opencascade                               |      7 | {simulations}                                                       | 
- persalys                                  |      7 | {engineering,statistics,mathematics}                                | 
+ persalys                                  |      7 | {mathematics,engineering,statistics}                                | 
  psurface                                  |      7 | {numericalcomputation}                                              | 
  refmac-dictionary                         |      7 | {highenergy-physics-dev,chemistry}                                  | 
  ros-rosconsole                            |      7 | {robotics-dev}                                                      | 
  uctodata                                  |      7 | {linguistics}                                                       | 
  cld2                                      |      6 | {linguistics}                                                       | 
  etsf-io                                   |      6 | {physics,nanoscale-physics}                                         | 
- fftw                                      |      6 | {meteorology-dev,mathematics-dev,physics-dev}                       | 
+ fftw                                      |      6 | {meteorology-dev,physics-dev,mathematics-dev}                       | 
  magics++                                  |      6 | {meteorology-dev}                                                   | 
  metar                                     |      6 | {meteorology}                                                       | 
  odc                                       |      6 | {meteorology-dev}                                                   | 
@@ -78,23 +78,23 @@ Last-Update: Sat, 21 Jun 2025 13:42:08 +0000
  ros-vcstool                               |      6 | {robotics-dev}                                                      | 
  fpzip                                     |      5 | {meteorology}                                                       | 
  newmat                                    |      5 | {mathematics-dev}                                                   | 
- persalys                                  |      5 | {statistics,mathematics,engineering}                                | 
+ persalys                                  |      5 | {engineering,statistics,mathematics}                                | 
  rheolef                                   |      5 | {mathematics}                                                       | 
  rubiks                                    |      5 | {geometry,mathematics}                                              | 
  toontag                                   |      5 | {numericalcomputation}                                              | 
- toulbar2                                  |      5 | {logic,numericalcomputation,mathematics,physics}                    | 
+ toulbar2                                  |      5 | {mathematics,logic,physics,numericalcomputation}                    | 
  ucto                                      |      5 | {linguistics}                                                       | 
  veccore                                   |      5 | {mathematics-dev}                                                   | 
  atlas-ecmwf                               |      4 | {meteorology}                                                       | 
  auto-07p                                  |      4 | {mathematics}                                                       | 
  coda                                      |      4 | {meteorology-dev}                                                   | 
  coda                                      |      4 | {meteorology}                                                       | 
- debian-science                            |      4 | {economics,nanoscale-physics,machine-learning,physics,mathematics}  | 
- debian-science                            |      4 | {physics,machine-learning,economics,nanoscale-physics}              | 
- getdp                                     |      4 | {engineering,mathematics,simulations}                               | 
+ debian-science                            |      4 | {mathematics,physics,machine-learning,nanoscale-physics,economics}  | 
+ debian-science                            |      4 | {physics,economics,machine-learning,nanoscale-physics}              | 
+ getdp                                     |      4 | {mathematics,simulations,engineering}                               | 
  gsw                                       |      4 | {meteorology}                                                       | 
  iapws                                     |      4 | {meteorology}                                                       | 
- sdpb                                      |      4 | {numericalcomputation,highenergy-physics}                           | 
+ sdpb                                      |      4 | {highenergy-physics,numericalcomputation}                           | 
  silo-llnl                                 |      4 | {engineering}                                                       | 
  toon                                      |      4 | {numericalcomputation}                                              | 
  urdfdom-headers                           |      4 | {robotics-dev}                                                      | 
@@ -149,9 +149,9 @@ Last-Update: Sat, 21 Jun 2025 13:42:08 +0000
  libgtkdatabox                             |      2 | {engineering-dev,viewing-dev}                                       | 
  libmatheval                               |      2 | {mathematics-dev}                                                   | 
  metkit                                    |      2 | {meteorology}                                                       | 
- mmdb                                      |      2 | {nanoscale-physics-dev,highenergy-physics-dev}                      | 
+ mmdb                                      |      2 | {highenergy-physics-dev,nanoscale-physics-dev}                      | 
  mseed2sac                                 |      2 | {dataacquisition-dev}                                               | 
- ncrystal                                  |      2 | {nanoscale-physics-dev,highenergy-physics-dev}                      | 
+ ncrystal                                  |      2 | {highenergy-physics-dev,nanoscale-physics-dev}                      | 
  nrn-iv                                    |      2 | {biology}                                                           | 
  polylib                                   |      2 | {mathematics}                                                       | 
  qd                                        |      2 | {mathematics-dev}                                                   | 
@@ -164,7 +164,7 @@ Last-Update: Sat, 21 Jun 2025 13:42:08 +0000
  coda                                      |      1 | {meteorology-dev}                                                   | 
  code-saturne                              |      1 | {engineering-dev,mathematics-dev}                                   | 
  code-saturne                              |      1 | {mathematics-dev,engineering-dev}                                   | 
- coinmp                                    |      1 | {logic,mathematics-dev,numericalcomputation}                        | 
+ coinmp                                    |      1 | {logic,numericalcomputation,mathematics-dev}                        | 
  debian-science                            |      1 | {tools}                                                             | 
  debian-science                            |      1 | {neuroscience-cognitive,machine-learning}                           | 
  debian-science                            |      1 | {psychophysics}                                                     | 
@@ -189,9 +189,9 @@ Last-Update: Sat, 21 Jun 2025 13:42:08 +0000
  openmesh                                  |      1 | {mathematics-dev}                                                   | 
  psurface                                  |      1 | {numericalcomputation}                                              | 
  ros-ros-environment                       |      1 | {robotics-dev}                                                      | 
- schroedinger-coordgenlibs                 |      1 | {nanoscale-physics-dev,chemistry}                                   | 
+ schroedinger-coordgenlibs                 |      1 | {chemistry,nanoscale-physics-dev}                                   | 
  siscone                                   |      1 | {highenergy-physics-dev}                                            | 
- spfft                                     |      1 | {mathematics-dev,nanoscale-physics-dev,physics-dev,meteorology-dev} | 
+ spfft                                     |      1 | {meteorology-dev,physics-dev,mathematics-dev,nanoscale-physics-dev} | 
  ssm                                       |      1 | {nanoscale-physics-dev}                                             | 
  tfdocgen                                  |      1 | {linguistics}                                                       | 
  timbl                                     |      1 | {linguistics}                                                       | 
@@ -206,7 +206,7 @@ Last-Update: Sat, 21 Jun 2025 13:42:08 +0000
  apertium-urd                              |      0 | {linguistics}                                                       | 
  apertium-urd-hin                          |      0 | {linguistics}                                                       | 
  apriltag                                  |      0 | {robotics-dev}                                                      | 
- calculix-ccx-test                         |      0 | {simulations,numericalcomputation,engineering}                      | 
+ calculix-ccx-test                         |      0 | {simulations,engineering,numericalcomputation}                      | 
  clhep                                     |      0 | {highenergy-physics-dev}                                            | 
  cmor                                      |      0 | {meteorology-dev}                                                   | 
  coda                                      |      0 | {meteorology-dev}                                                   | 
@@ -227,17 +227,17 @@ Last-Update: Sat, 21 Jun 2025 13:42:08 +0000
  libsdsl                                   |      0 | {dataacquisition-dev}                                               | 
  looptools                                 |      0 | {highenergy-physics-dev}                                            | 
  looptools                                 |      0 | {highenergy-physics}                                                | 
- magma                                     |      0 | {mathematics-dev,numericalcomputation}                              | 
+ magma                                     |      0 | {numericalcomputation,mathematics-dev}                              | 
  mbt                                       |      0 | {linguistics}                                                       | 
  mctc-lib                                  |      0 | {nanoscale-physics-dev,highenergy-physics-dev}                      | 
  meshsdfilter                              |      0 | {mathematics-dev}                                                   | 
+ metis-edf                                 |      0 | {numericalcomputation,engineering}                                  | 
  metis-edf                                 |      0 | {engineering-dev}                                                   | 
- metis-edf                                 |      0 | {engineering,numericalcomputation}                                  | 
  nrn-mod2c                                 |      0 | {biology}                                                           | 
  openctm                                   |      0 | {physics-dev}                                                       | 
  opengv                                    |      0 | {geometry}                                                          | 
  openigtlink                               |      0 | {robotics-dev}                                                      | 
- python-escript                            |      0 | {numericalcomputation,simulations,engineering}                      | 
+ python-escript                            |      0 | {engineering,numericalcomputation,simulations}                      | 
  python-opcodes                            |      0 | {tools}                                                             | 
  qrupdate                                  |      0 | {mathematics-dev}                                                   | 
  quadrule                                  |      0 | {mathematics-dev}                                                   | 
@@ -253,7 +253,7 @@ Last-Update: Sat, 21 Jun 2025 13:42:08 +0000
  sagemath-database-polytopes               |      0 | {mathematics}                                                       | 
  schroedinger-maeparser                    |      0 | {chemistry,nanoscale-physics-dev}                                   | 
  siscone                                   |      0 | {highenergy-physics-dev}                                            | 
- slicot                                    |      0 | {robotics-dev,engineering-dev}                                      | 
+ slicot                                    |      0 | {engineering-dev,robotics-dev}                                      | 
  sparskit                                  |      0 | {mathematics-dev}                                                   | 
  ssm                                       |      0 | {nanoscale-physics}                                                 | 
  tachyon                                   |      0 | {mathematics}                                                       | 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.

=====================================
python-team-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sat, 21 Jun 2025 13:42:11 +0000
+Last-Update: Sun, 22 Jun 2025 01:42:12 +0000
 
      Source                             | Vote   |                          Tags                          
 ----------------------------------------+--------+--------------------------------------------------------



View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2492475ecfaedfdd1803270927db11d8fe2c8cf9

-- 
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2492475ecfaedfdd1803270927db11d8fe2c8cf9
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