[med-svn] [Git][med-team/bbmap][master] 4 commits: New upstream version 39.18+dfsg

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / bbmap


Commits:
be65f409 by Étienne Mollier at 2025-03-01T18:34:31+01:00
New upstream version 39.18+dfsg
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2496487c by Étienne Mollier at 2025-03-01T18:34:39+01:00
Update upstream source from tag 'upstream/39.18+dfsg'

Update to upstream version '39.18+dfsg'
with Debian dir 357ec61f5abd9e026316a6ca3093863b3946012a
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1d220b56 by Étienne Mollier at 2025-03-01T18:35:50+01:00
d/control: declare compliance to standards version 4.7.2.

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fc244d65 by Étienne Mollier at 2025-03-01T18:36:18+01:00
d/changelog: ready for upload to unstable.

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72 changed files:

- README.md
- + cat.sh
- clumpify.sh
- current/align2/AbstractMapThread.java
- current/align2/AbstractMapper.java
- current/assemble/KmerCompressor.java
- current/assemble/Tadpole.java
- current/barcode/NovaDemux.java
- + current/bin/AdjustEntropy.java
- + current/bin/AllToAllVectorMaker.java
- current/bin/Bin.java
- + current/bin/BinComparator.java
- + current/bin/BinMap.java
- current/bin/BinObject.java
- current/bin/BinSketcher.java
- + current/bin/BinStats.java
- + current/bin/BinStatsComparator.java
- current/bin/Binner.java
- + current/bin/ChartMaker.java
- current/bin/Cluster.java
- current/bin/Contig.java
- current/bin/ContigRenamer.java
- current/bin/DataLoader.java
- + current/bin/GradeBins.java
- + current/bin/IDComparator.java
- + current/bin/Key.java
- + current/bin/KeyValue.java
- + current/bin/Oracle.java
- current/bin/QuickBin.java
- current/bin/RandomReadsMG.java
- + current/bin/SamLoader.java
- + current/bin/ScoreComparator.java
- current/bin/SimilarityMeasures.java
- + current/bin/SpectraCounter.java
- current/fileIO/ByteStreamWriter.java
- + current/fileIO/Concatenate.java
- current/fileIO/FileFormat.java
- + current/jgi/Assembly.java
- + current/jgi/AssemblyStats3.java
- current/jgi/CoveragePileupMT.java
- current/jgi/DemuxByName.java
- current/jgi/DemuxByName2.java
- current/jgi/MakeChimeras.java
- + current/ml/ReduceColumns.java
- current/shared/LineParser4.java
- current/shared/Parse.java
- current/shared/Parser.java
- current/shared/Shared.java
- current/shared/Timer.java
- current/shared/Tools.java
- current/sketch/SendSketch.java
- current/sketch/SketchMakerMini.java
- current/sketch/SketchTool.java
- current/stream/SamLine.java
- current/stream/SamLineStreamer.java
- current/stream/SamStreamer.java
- current/structures/FloatList.java
- current/structures/IntHashMap.java
- current/structures/IntLongHashMap.java
- current/tracker/EntropyTracker.java
- debian/changelog
- debian/control
- + gradebins.sh
- + makequickbinvector.sh
- pileup2.sh
- quickbin.sh
- + randomreadsmg.sh
- + reducecolumns.sh
- + renamebymapping.sh
- + renamebysketch.sh
- + resources/entropy_k4_w150.tsv
- + stats3.sh


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/9c6ec7106d44796c14c1832a2b4acae91a2423c6...fc244d654ab42f5afcc9c43560ef9e57b6a0c9f1

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View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/9c6ec7106d44796c14c1832a2b4acae91a2423c6...fc244d654ab42f5afcc9c43560ef9e57b6a0c9f1
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