[med-svn] [Git][med-team/toil][master] more test fixes

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / toil


Commits:
7eddb5f5 by Michael R. Crusoe at 2025-03-17T19:11:25+01:00
more test fixes

- - - - -


2 changed files:

- debian/patches/fix_tests
- debian/rules


Changes:

=====================================
debian/patches/fix_tests
=====================================
@@ -430,7 +430,7 @@ index 4098976..822cfb4 100644
          "--importWorkersDisk=10MiB",
          "--realTimeLogging=True",
 diff --git a/src/toil/test/docs/scripts/tutorial_staging.py b/src/toil/test/docs/scripts/tutorial_staging.py
-index 17c2782..31a84d3 100644
+index 17c2782..c2099ad 100644
 --- a/src/toil/test/docs/scripts/tutorial_staging.py
 +++ b/src/toil/test/docs/scripts/tutorial_staging.py
 @@ -3,7 +3,7 @@ import os
@@ -468,7 +468,7 @@ index 17c2782..31a84d3 100644
          toil.exportFile(
              outputFileID,
 -            "file://" + os.path.abspath(os.path.join(ioFileDirectory, "out.txt")),
-+            "file://" + get_data("toil/test/docs/scripts/stagingExampleFiles/out.txt"),
++            "file://" + os.path.join(tmp + "out.txt"),
          )
 diff --git a/src/toil/test/provisioners/aws/awsProvisionerTest.py b/src/toil/test/provisioners/aws/awsProvisionerTest.py
 index cae25e4..a505da4 100644


=====================================
debian/rules
=====================================
@@ -5,7 +5,7 @@ include /usr/share/dpkg/default.mk
 export PYBUILD_NAME=toil
 
 export PYBUILD_DESTDIR_python3=debian/toil/
-PYBUILD_TEST_ARGS=$(DEB_BUILD_OPTION_PARALLEL:%=-n %) --dist loadscope -vv -W ignore  -k "not (testVirtualEnv)"
+PYBUILD_TEST_ARGS=$(DEB_BUILD_OPTION_PARALLEL:%=-n %) --dist loadscope -vv -W ignore  -k "not (testVirtualEnv or DockstoreLookupTest)"
 # testVirtualEnv - requires an internet connection to download packages from PyPI
 ifeq ($(PYBUILD_AUTOPKGTEST),1)
 PYBUILD_TEST_ARGS += --ignore /usr/lib/python3/dist-packages/toil/test/lib/aws/test_s3.py --ignore /usr/lib/python3/dist-packages/toil/test/provisioners/aws/awsProvisionerTest.py --ignore /usr/lib/python3/dist-packages/toil/test/wdl/wdltoil_test.py --ignore /usr/lib/python3/dist-packages/toil/test/cwl/cwlTest.py --ignore /usr/lib/python3/dist-packages/toil/test/lib/test_ec2.py --ignore /usr/lib/python3/dist-packages/toil/test/batchSystems/batchSystemTest.py --ignore /usr/lib/python3/dist-packages/toil/test/lib/aws/test_iam.py --ignore  /usr/lib/python3/dist-packages/toil/test/provisioners/clusterTest.py --ignore /usr/lib/python3/dist-packages/toil/test/wdl/wdltoil_test_kubernetes.py --ignore /usr/lib/python3/dist-packages/toil/test/cactus/test_cactus_integration.py --pyargs toil.test



View it on GitLab: https://salsa.debian.org/med-team/toil/-/commit/7eddb5f52a63d022dbb115f37eec138b4a4e2db2

-- 
View it on GitLab: https://salsa.debian.org/med-team/toil/-/commit/7eddb5f52a63d022dbb115f37eec138b4a4e2db2
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