[med-svn] [Git][med-team/crac][master] 6 commits: Add patch to fix FTBFS with make shuffle (Closes: #1105260)

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / crac


Commits:
60c1bd64 by Nilesh Patra at 2025-11-01T14:16:42+05:30
Add patch to fix FTBFS with make shuffle (Closes: #1105260)

- - - - -
b7f25d17 by Nilesh Patra at 2025-11-01T14:16:49+05:30
Drop Redundant "Rules-Requires-Root: no"

- - - - -
b89a1dbb by Nilesh Patra at 2025-11-01T14:16:53+05:30
Bump Standards-Version to 4.7.2 (no changes needed)

- - - - -
e93f3104 by Nilesh Patra at 2025-11-01T14:17:10+05:30
Drop myself from uploaders

- - - - -
9c6e48b1 by Nilesh Patra at 2025-11-01T14:23:40+05:30
Disable salsa CI build on i386

- - - - -
c2d08df6 by Nilesh Patra at 2025-11-01T14:23:44+05:30
Upload to unstable

- - - - -


5 changed files:

- debian/changelog
- debian/control
- + debian/patches/make-shuffle.patch
- debian/patches/series
- debian/salsa-ci.yml


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+crac (2.5.2+dfsg-7) unstable; urgency=medium
+
+  * Team Upload.
+  * Add patch to fix FTBFS with make shuffle (Closes: #1105260)
+  * Drop Redundant "Rules-Requires-Root: no"
+  * Bump Standards-Version to 4.7.2 (no changes needed)
+  * Drop myself from uploaders
+
+ -- Nilesh Patra <nilesh at debian.org>  Sat, 01 Nov 2025 14:22:09 +0530
+
 crac (2.5.2+dfsg-6) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -1,6 +1,6 @@
 Source: crac
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Andreas Tille <tille at debian.org>, Nilesh Patra <nilesh at debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
 Build-Depends: debhelper-compat (= 13),
@@ -12,11 +12,10 @@ Build-Depends: debhelper-compat (= 13),
                libgkarrays-dev,
                pkg-config,
                rsync
-Standards-Version: 4.6.0
+Standards-Version: 4.7.2
 Vcs-Browser: https://salsa.debian.org/med-team/crac
 Vcs-Git: https://salsa.debian.org/med-team/crac.git
 Homepage: https://crac.gforge.inria.fr/
-Rules-Requires-Root: no
 
 Package: crac
 Architecture: any


=====================================
debian/patches/make-shuffle.patch
=====================================
@@ -0,0 +1,21 @@
+Description: index_genomes.sh needs to run first for other tests to find index files
+Author: Nilesh Patra <nilesh at debian.org>
+Last-Update: 2025-11-01
+--- a/test_f/Makefile.am
++++ b/test_f/Makefile.am
+@@ -106,6 +106,10 @@
+ 
+ script_tests = index_genomes.sh launch_sg.sh test_index.sh
+ 
++# Add dep on tests
++launch_sg.sh: index_genomes.sh.log
++test_index.sh: index_genomes.sh.log
++
+ should_get_files = $(shell find . -name "*.should_get")
+ fasta_files = $(shell find . -name "*.fasta" -o -name "*.fa")
+ fastq_files = $(shell find . -name "*.fastq" -o -name "*.fq")
+@@ -116,3 +120,4 @@
+ CLEANFILES = *~ *.tap *.gcda *.gcno *.valgrind
+ DISTCLEANFILES = *~
+ MAINTAINERCLEANFILES = *~
++.PHONY: launch_sg.sh test_index.sh


=====================================
debian/patches/series
=====================================
@@ -6,3 +6,4 @@ reproducible_build.patch
 cross.patch
 bashism.patch
 tempfile.patch
+make-shuffle.patch


=====================================
debian/salsa-ci.yml
=====================================
@@ -2,3 +2,6 @@
 include:
   - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
   - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
+
+variables:
+  SALSA_CI_DISABLE_BUILD_PACKAGE_I386: 1



View it on GitLab: https://salsa.debian.org/med-team/crac/-/compare/59b7289769898719bb56828526d0f46010b1ae77...c2d08df65c1923fcc51efb3cee8a7ace8946b7ec

-- 
View it on GitLab: https://salsa.debian.org/med-team/crac/-/compare/59b7289769898719bb56828526d0f46010b1ae77...c2d08df65c1923fcc51efb3cee8a7ace8946b7ec
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