[med-svn] [Git][med-team/libslow5lib][upstream] New upstream version 1.3.1+dfsg

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch upstream at Debian Med / libslow5lib


Commits:
f1f60f4f by Étienne Mollier at 2025-11-05T19:49:06+01:00
New upstream version 1.3.1+dfsg
- - - - -


63 changed files:

- .travis.yml
- CMakeLists.txt
- README.md
- docs/getting_started.md
- docs/index.md
- docs/pyslow5_api/pyslow5.md
- + docs/slow5_api/low_level_api/slow5_aux_add_enum.md
- + docs/slow5_api/low_level_api/slow5_idx_load_with.md
- + docs/slow5_api/low_level_api/slow5_set_skip_rid.md
- + docs/slow5_api/mt_api/slow5_free_batch.md
- + docs/slow5_api/mt_api/slow5_free_mt.md
- + docs/slow5_api/mt_api/slow5_get_batch.md
- + docs/slow5_api/mt_api/slow5_get_next_batch.md
- + docs/slow5_api/mt_api/slow5_init_batch.md
- + docs/slow5_api/mt_api/slow5_init_mt.md
- + docs/slow5_api/mt_api/slow5_write_batch.md
- docs/slow5_api/slow5.md
- docs/slow5_api/slow5_internal.md
- docs/slow5_api/slow5_low_level_api.md
- + docs/slow5_api/slow5_mt_api.md
- docs/slow5_api/slow5_set_press.md
- examples/adv/README.md
- + examples/adv/auxiliary_field_enum_write.c
- examples/adv/build.sh
- + examples/mt/README.md
- + examples/mt/build.sh
- + examples/mt/lazymt.c
- + examples/mt/mt.c
- include/slow5/slow5.h
- include/slow5/slow5_defs.h
- + include/slow5/slow5_mt.h
- include/slow5/slow5_press.h
- python/README.md
- python/example.py
- python/pydebug.sh
- python/pyslow5.h
- python/pyslow5.pxd
- python/pyslow5.pyx
- + python/pytest.sh
- − python/slow5threads.h
- python/test.py
- python/valgrind-python.supp
- setup.py
- src/slow5.c
- + src/slow5_byte.h
- src/slow5_extra.h
- src/slow5_idx.c
- src/slow5_idx.h
- python/slow5threads.c → src/slow5_mt.c
- src/slow5_press.c
- test/bench/build.sh
- test/bench/convert_to_pa.c
- test/bench/convert_to_pa_rand.c
- test/bench/get_all.c
- test/bench/get_all_read_ids.c → test/bench/get_read_ids.c
- test/bench/get_selected_read_ids_read_number.c → test/bench/get_read_number_rand.c
- test/bench/get_selected_read_ids_sample_count.c → test/bench/get_sample_count_rand.c
- test/bench/get_all_samples.c → test/bench/get_samples.c
- test/bench/get_all_samples_no_pipelining.c → test/bench/get_samples_no_pipelining.c
- test/bench/get_selected_read_ids_samples.c → test/bench/get_samples_rand.c
- + test/bench/readme.md
- test/unit_test_helpers.c
- test/unit_test_press.c


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/libslow5lib/-/commit/f1f60f4f76420ef7cce18fd9365cf526d0fba3b2

-- 
View it on GitLab: https://salsa.debian.org/med-team/libslow5lib/-/commit/f1f60f4f76420ef7cce18fd9365cf526d0fba3b2
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20251105/ea7841b8/attachment-0001.htm>