[med-svn] [Git][med-team/psortb][master] 7 commits: d/watch: convert to v5 untrackable watch file.
Étienne Mollier (@emollier)
gitlab at salsa.debian.org
Thu Nov 13 18:39:02 GMT 2025
Étienne Mollier pushed to branch master at Debian Med / psortb
Commits:
2b0f8a64 by Étienne Mollier at 2025-11-13T19:21:09+01:00
d/watch: convert to v5 untrackable watch file.
- - - - -
9f70c066 by Étienne Mollier at 2025-11-13T19:22:08+01:00
d/control: drop redundant Rules-Requires-Root: no.
- - - - -
b02fc63f by Étienne Mollier at 2025-11-13T19:22:25+01:00
d/control: declare compliance to standards version 4.7.2.
- - - - -
f64837ce by Étienne Mollier at 2025-11-13T19:24:00+01:00
d/control: build depends on perl-xs-dev.
Closes: #1102847
- - - - -
fe4c86fe by Étienne Mollier at 2025-11-13T19:30:50+01:00
d/patches/*: fix dep3 headers.
- - - - -
53e3582a by Étienne Mollier at 2025-11-13T19:37:41+01:00
d/clean: cleanup a few more files.
Closes: #1048520
- - - - -
af6e956a by Étienne Mollier at 2025-11-13T19:38:30+01:00
d/changelog: ready for upload to unstable.
- - - - -
9 changed files:
- debian/changelog
- debian/clean
- debian/control
- debian/patches/biosquid_includes.patch
- debian/patches/fix_build_Algorithm-SVM.patch
- debian/patches/fix_hmmer_interface.patch
- debian/patches/fix_module_path.patch
- debian/patches/path_to_conf.patch
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,14 @@
+psortb (3.0.6+dfsg-5) unstable; urgency=medium
+
+ * d/control: build depends on perl-xs-dev. (Closes: #1102847)
+ * d/clean: cleanup a few more files. (Closes: #1048520)
+ * d/watch: convert to v5 untrackable watch file.
+ * d/control: drop redundant Rules-Requires-Root: no.
+ * d/control: declare compliance to standards version 4.7.2.
+ * d/patches/*: fix dep3 headers.
+
+ -- Étienne Mollier <emollier at debian.org> Thu, 13 Nov 2025 19:38:08 +0100
+
psortb (3.0.6+dfsg-4) unstable; urgency=medium
[ Andreas Tille ]
=====================================
debian/clean
=====================================
@@ -1,2 +1,4 @@
+algorithm-hmm/sample.hmm.1
+psort/conf/analysis/sclblast/archaea/sclblast.*
psort/conf/analysis/sclblast/gramneg/sclblast.*
psort/conf/analysis/sclblast/grampos/sclblast.*
=====================================
debian/control
=====================================
@@ -13,13 +13,13 @@ Build-Depends: debhelper-compat (= 13),
libhmmer2-dev,
libsvmloc-dev,
libmodhmm-dev,
+ perl-xs-dev,
pkgconf,
pftools,
-Standards-Version: 4.7.0
+Standards-Version: 4.7.2
Vcs-Browser: https://salsa.debian.org/med-team/psortb
Vcs-Git: https://salsa.debian.org/med-team/psortb.git
Homepage: https://www.psort.org/
-Rules-Requires-Root: no
Package: psortb
Architecture: any
=====================================
debian/patches/biosquid_includes.patch
=====================================
@@ -1,5 +1,5 @@
Author: Andreas Tille <tille at debian.org>
-Last-Update: Fri, 17 Mar 2017 10:23:15 +010
+Last-Update: 2017-03-17
Description: Include header files provided by libsquid-dev
--- a/algorithm-hmm/Makefile.PL
=====================================
debian/patches/fix_build_Algorithm-SVM.patch
=====================================
@@ -1,5 +1,5 @@
Author: Andreas Tille <tille at debian.org>
-Last-Update: Fri, 17 Mar 2017 10:23:15 +010
+Last-Update: 2017-03-17
Origin: https://rt.cpan.org/Public/Bug/Display.html?id=79754
Description: Fix Build of code copy of Algorithm-SVM
=====================================
debian/patches/fix_hmmer_interface.patch
=====================================
@@ -1,5 +1,5 @@
Author: Andreas Tille <tille at debian.org>
-Last-Update: Fri, 17 Mar 2017 10:23:15 +010
+Last-Update: 2017-03-17
Description: Enable linking against libhmmer.a as packaged
in hmmer2 source package
=====================================
debian/patches/fix_module_path.patch
=====================================
@@ -1,4 +1,8 @@
-Description: Fix module path in InputI.pm
+Description: Fix module path in InputI.pm to fix tests
+Author: Nilesh Patra <npatra974 at gmail.com>
+Last-Update: 2020-02-21
+Forwarded: no
+---
--- a/lib/Bio/Tools/PSort/Module/InputI.pm
+++ b/lib/Bio/Tools/PSort/Module/InputI.pm
@@ -55,7 +55,7 @@
=====================================
debian/patches/path_to_conf.patch
=====================================
@@ -1,5 +1,5 @@
Author: Andreas Tille <tille at debian.org>
-Last-Update: Fri, 17 Mar 2017 10:23:15 +010
+Last-Update: 2017-03-17
Description: Fix path to conf and other binaries
It is assumed that conf should not be changed by the user.
In case it turns out that users need to change this the files should be
=====================================
debian/watch
=====================================
@@ -1,4 +1,9 @@
-version=4
+Version: 5
+Untrackable: web page guards against bots, download by hand.
-opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \
- https://www.psort.org/downloads .*/bio-tools-psort-all.(\d[.\d]+)\.tar\.gz
+Source: https://www.psort.org/downloads
+Matching-Pattern: .*/bio-tools-psort-all.(\d[.\d]+)\.tar\.gz
+DVersion-Mangle: auto
+Repack: yes
+Repack-Suffix: +dfsg
+Compression: xz
View it on GitLab: https://salsa.debian.org/med-team/psortb/-/compare/a2a335afecd76c98ece34d6116691529723d032c...af6e956a1e2083555c4393699ad96ef07970faa7
--
View it on GitLab: https://salsa.debian.org/med-team/psortb/-/compare/a2a335afecd76c98ece34d6116691529723d032c...af6e956a1e2083555c4393699ad96ef07970faa7
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