[med-svn] [Git][med-team/python-pymummer][master] 10 commits: d/watch: repair and convert to v5 Github template.

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / python-pymummer


Commits:
62fe5d04 by Étienne Mollier at 2025-11-13T21:02:36+01:00
d/watch: repair and convert to v5 Github template.

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2a9a5eaf by Étienne Mollier at 2025-11-13T21:03:05+01:00
New upstream version 0.12.0
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34e6557a by Étienne Mollier at 2025-11-13T21:03:05+01:00
Update upstream source from tag 'upstream/0.12.0'

Update to upstream version '0.12.0'
with Debian dir ed0643bb02fa49cb64cc0f3eda43c93ed32cd782
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9d12e39f by Étienne Mollier at 2025-11-13T21:03:44+01:00
d/control: declare compliance to standards version 4.7.2.

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7cd64567 by Étienne Mollier at 2025-11-13T21:04:02+01:00
d/control: drop redundant Rules-Requires-Root: no.

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76999b8b by Étienne Mollier at 2025-11-13T21:06:09+01:00
remove_pkg_resources.patch: delete: fixed upstream.

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d43c3208 by Étienne Mollier at 2025-11-13T21:07:45+01:00
d/control: build depends on pybuild-plugin-pyproject.

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f273812b by Étienne Mollier at 2025-11-13T21:22:20+01:00
d/control: build depends on hatchling components.

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44f41b49 by Étienne Mollier at 2025-11-13T21:23:44+01:00
d/rules: drop moving tests/ around.

Closes: #1120633

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1957857d by Étienne Mollier at 2025-11-13T21:24:50+01:00
d/changelog: ready for upload to unstable.

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53 changed files:

- .gitignore
- .travis.yml
- README.md
- debian/changelog
- debian/control
- − debian/patches/remove_pkg_resources.patch
- − debian/patches/series
- debian/rules
- debian/watch
- + env_osx64.yml
- + environment.yml
- − pymummer/__init__.py
- − pymummer/tests/coords_file_test.py
- − pymummer/tests/nucmer_test.py
- − pymummer/tests/snp_file_test.py
- − pymummer/tests/snp_test.py
- − pymummer/tests/variant_test.py
- + pyproject.toml
- install_dependencies.sh → scripts/install_dependencies.sh
- − setup.py
- + src/pymummer/__init__.py
- pymummer/alignment.py → src/pymummer/alignment.py
- pymummer/coords_file.py → src/pymummer/coords_file.py
- pymummer/nucmer.py → src/pymummer/nucmer.py
- pymummer/snp.py → src/pymummer/snp.py
- pymummer/snp_file.py → src/pymummer/snp_file.py
- pymummer/syscall.py → src/pymummer/syscall.py
- pymummer/variant.py → src/pymummer/variant.py
- pymummer/tests/alignment_test.py → tests/alignment_test.py
- + tests/coords_file_test.py
- pymummer/tests/data/coords_file_test_convert_to_msp_crunch.coords → tests/data/coords_file_test_convert_to_msp_crunch.coords
- pymummer/tests/data/coords_file_test_convert_to_msp_crunch.no_offset.crunch → tests/data/coords_file_test_convert_to_msp_crunch.no_offset.crunch
- pymummer/tests/data/coords_file_test_convert_to_msp_crunch.qry.fa → tests/data/coords_file_test_convert_to_msp_crunch.qry.fa
- pymummer/tests/data/coords_file_test_convert_to_msp_crunch.qry.fa.fai → tests/data/coords_file_test_convert_to_msp_crunch.qry.fa.fai
- pymummer/tests/data/coords_file_test_convert_to_msp_crunch.ref.fa → tests/data/coords_file_test_convert_to_msp_crunch.ref.fa
- pymummer/tests/data/coords_file_test_convert_to_msp_crunch.ref.fa.fai → tests/data/coords_file_test_convert_to_msp_crunch.ref.fa.fai
- pymummer/tests/data/coords_file_test_convert_to_msp_crunch.with_offset.crunch → tests/data/coords_file_test_convert_to_msp_crunch.with_offset.crunch
- pymummer/tests/data/coords_file_test_no_header.coords → tests/data/coords_file_test_no_header.coords
- pymummer/tests/data/coords_file_test_with_header.coords → tests/data/coords_file_test_with_header.coords
- pymummer/tests/data/nucmer_test_out.coords → tests/data/nucmer_test_out.coords
- pymummer/tests/data/nucmer_test_out.coords.snps → tests/data/nucmer_test_out.coords.snps
- pymummer/tests/data/nucmer_test_qry.fa → tests/data/nucmer_test_qry.fa
- pymummer/tests/data/nucmer_test_ref.fa → tests/data/nucmer_test_ref.fa
- pymummer/tests/data/nucmer_test_write_script_no_snps.sh → tests/data/nucmer_test_write_script_no_snps.sh
- pymummer/tests/data/nucmer_test_write_script_with_snps.sh → tests/data/nucmer_test_write_script_with_snps.sh
- pymummer/tests/data/snp_file_test_get_all_variants.snps → tests/data/snp_file_test_get_all_variants.snps
- pymummer/tests/data/snp_file_test_no_header.snps → tests/data/snp_file_test_no_header.snps
- pymummer/tests/data/snp_file_test_with_header.snps → tests/data/snp_file_test_with_header.snps
- + tests/nucmer_test.py
- + tests/snp_file_test.py
- + tests/snp_test.py
- pymummer/tests/syscall_test.py → tests/syscall_test.py
- + tests/variant_test.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-pymummer/-/compare/36f79ecde997331d7a2b07da383c095b194baa91...1957857d6aa63a14002653a6970e1aed8641ae5f

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View it on GitLab: https://salsa.debian.org/med-team/python-pymummer/-/compare/36f79ecde997331d7a2b07da383c095b194baa91...1957857d6aa63a14002653a6970e1aed8641ae5f
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