[med-svn] [Git][med-team/python-pymummer][upstream] New upstream version 0.12.0

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch upstream at Debian Med / python-pymummer


Commits:
2a9a5eaf by Étienne Mollier at 2025-11-13T21:03:05+01:00
New upstream version 0.12.0
- - - - -


47 changed files:

- .gitignore
- .travis.yml
- README.md
- + env_osx64.yml
- + environment.yml
- − pymummer/__init__.py
- − pymummer/tests/coords_file_test.py
- − pymummer/tests/nucmer_test.py
- − pymummer/tests/snp_file_test.py
- − pymummer/tests/snp_test.py
- − pymummer/tests/variant_test.py
- + pyproject.toml
- install_dependencies.sh → scripts/install_dependencies.sh
- − setup.py
- + src/pymummer/__init__.py
- pymummer/alignment.py → src/pymummer/alignment.py
- pymummer/coords_file.py → src/pymummer/coords_file.py
- pymummer/nucmer.py → src/pymummer/nucmer.py
- pymummer/snp.py → src/pymummer/snp.py
- pymummer/snp_file.py → src/pymummer/snp_file.py
- pymummer/syscall.py → src/pymummer/syscall.py
- pymummer/variant.py → src/pymummer/variant.py
- pymummer/tests/alignment_test.py → tests/alignment_test.py
- + tests/coords_file_test.py
- pymummer/tests/data/coords_file_test_convert_to_msp_crunch.coords → tests/data/coords_file_test_convert_to_msp_crunch.coords
- pymummer/tests/data/coords_file_test_convert_to_msp_crunch.no_offset.crunch → tests/data/coords_file_test_convert_to_msp_crunch.no_offset.crunch
- pymummer/tests/data/coords_file_test_convert_to_msp_crunch.qry.fa → tests/data/coords_file_test_convert_to_msp_crunch.qry.fa
- pymummer/tests/data/coords_file_test_convert_to_msp_crunch.qry.fa.fai → tests/data/coords_file_test_convert_to_msp_crunch.qry.fa.fai
- pymummer/tests/data/coords_file_test_convert_to_msp_crunch.ref.fa → tests/data/coords_file_test_convert_to_msp_crunch.ref.fa
- pymummer/tests/data/coords_file_test_convert_to_msp_crunch.ref.fa.fai → tests/data/coords_file_test_convert_to_msp_crunch.ref.fa.fai
- pymummer/tests/data/coords_file_test_convert_to_msp_crunch.with_offset.crunch → tests/data/coords_file_test_convert_to_msp_crunch.with_offset.crunch
- pymummer/tests/data/coords_file_test_no_header.coords → tests/data/coords_file_test_no_header.coords
- pymummer/tests/data/coords_file_test_with_header.coords → tests/data/coords_file_test_with_header.coords
- pymummer/tests/data/nucmer_test_out.coords → tests/data/nucmer_test_out.coords
- pymummer/tests/data/nucmer_test_out.coords.snps → tests/data/nucmer_test_out.coords.snps
- pymummer/tests/data/nucmer_test_qry.fa → tests/data/nucmer_test_qry.fa
- pymummer/tests/data/nucmer_test_ref.fa → tests/data/nucmer_test_ref.fa
- pymummer/tests/data/nucmer_test_write_script_no_snps.sh → tests/data/nucmer_test_write_script_no_snps.sh
- pymummer/tests/data/nucmer_test_write_script_with_snps.sh → tests/data/nucmer_test_write_script_with_snps.sh
- pymummer/tests/data/snp_file_test_get_all_variants.snps → tests/data/snp_file_test_get_all_variants.snps
- pymummer/tests/data/snp_file_test_no_header.snps → tests/data/snp_file_test_no_header.snps
- pymummer/tests/data/snp_file_test_with_header.snps → tests/data/snp_file_test_with_header.snps
- + tests/nucmer_test.py
- + tests/snp_file_test.py
- + tests/snp_test.py
- pymummer/tests/syscall_test.py → tests/syscall_test.py
- + tests/variant_test.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-pymummer/-/commit/2a9a5eafa4bebd59931a2256aa6f04cb8396e205

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-pymummer/-/commit/2a9a5eafa4bebd59931a2256aa6f04cb8396e205
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20251113/9eb461e3/attachment.htm>