[med-svn] [Git][med-team/python-pysam][master] 7 commits: New upstream version 0.23.3+ds

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / python-pysam


Commits:
25e366d5 by Étienne Mollier at 2025-11-14T12:32:40+01:00
New upstream version 0.23.3+ds
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79de50eb by Étienne Mollier at 2025-11-14T12:32:45+01:00
Update upstream source from tag 'upstream/0.23.3+ds'

Update to upstream version '0.23.3+ds'
with Debian dir 76694f672dadadc85729d923f4dcc8e612672024
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e79bb3fc by Étienne Mollier at 2025-11-14T12:39:38+01:00
d/changelog: initialize the changelog.

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ad1ddaa0 by Étienne Mollier at 2025-11-14T12:40:09+01:00
d/control: declare compliance to standards version 4.7.2.

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2f4431d4 by Étienne Mollier at 2025-11-14T12:40:30+01:00
d/control: drop redundant Rules-Requires-Root: no.

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7b540026 by Étienne Mollier at 2025-11-14T12:42:17+01:00
d/watch: convert to v5 Github template.

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346f990c by Étienne Mollier at 2025-11-14T12:43:22+01:00
d/changelog: ready for upload to unstable.

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36 changed files:

- − .cirrus.yml
- − Containerfile
- INSTALL
- NEWS
- README.rst
- bcftools/bcftools.pysam.h
- debian/changelog
- debian/control
- debian/watch
- − devtools/buildwheels.sh
- − devtools/conda-recipe/build.sh
- − devtools/conda-recipe/meta.yaml
- + devtools/emulate-tools.py
- − devtools/install-CGAT-tools.sh
- devtools/install-prerequisites.sh
- − devtools/run_tests_travis.sh
- doc/installation.rst
- import/pysam.h
- pyproject.toml
- + pysam/conftest_cstd.c
- pysam/libcalignedsegment.pxd
- pysam/libcalignedsegment.pyi
- pysam/libcalignedsegment.pyx
- pysam/libcalignmentfile.pyx
- pysam/libcbcf.pyx
- pysam/libchtslib.pxd
- pysam/libctabix.pyx
- pysam/libcutils.pxd
- pysam/libcutils.pyx
- pysam/version.py
- samtools/samtools.pysam.h
- setup.py
- tests/AlignedSegment_test.py
- tests/compile_test.py
- − tests/refactoring.pl
- tests/samtools_test.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-pysam/-/compare/470b6ff96b6501f30be596694dad2deaf40187fa...346f990c89814b5df88eaf7512d9ded230cda702

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View it on GitLab: https://salsa.debian.org/med-team/python-pysam/-/compare/470b6ff96b6501f30be596694dad2deaf40187fa...346f990c89814b5df88eaf7512d9ded230cda702
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