[med-svn] [Git][med-team/lamassemble][master] 6 commits: New upstream version 1.7.4

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / lamassemble


Commits:
7963cf80 by Étienne Mollier at 2025-11-15T17:30:49+01:00
New upstream version 1.7.4
- - - - -
cf2d69ef by Étienne Mollier at 2025-11-15T17:30:50+01:00
Update upstream source from tag 'upstream/1.7.4'

Update to upstream version '1.7.4'
with Debian dir 731f531e760e180a593f18e1bcfccdad43b0bf1e
- - - - -
da58b854 by Étienne Mollier at 2025-11-15T17:31:26+01:00
d/control: declare compliance to standards version 4.7.2.

- - - - -
5d64b589 by Étienne Mollier at 2025-11-15T17:31:46+01:00
d/control: drop redundant Rules-Requires-Root: no.

- - - - -
753fd331 by Étienne Mollier at 2025-11-15T17:33:52+01:00
d/watch: convert to v5 Gitlab template.

- - - - -
975f8a75 by Étienne Mollier at 2025-11-15T17:34:25+01:00
d/changelog: ready for upload to unstable.

- - - - -


6 changed files:

- README.md
- debian/changelog
- debian/control
- debian/watch
- lamassemble
- setup.py


Changes:

=====================================
README.md
=====================================
@@ -98,9 +98,9 @@ similarities by increasing option `-m` (and/or decreasing `-u` or `-W`).
 - `-c`, `--consensus`: just make a consensus, of already-aligned sequences.
 
 - `-f FMT`, `--format=FMT`: consensus output format, fasta/fa or
-  fastq/fq.  Fastq shows the error probability of each base (assuming
-  the alignment is correct, so over-optimistic).  The format name is
-  case-insensitive.
+  fastq/fq.  Fastq shows -10 log<sub>10</sub> [error probability] of
+  each base (assuming the alignment is correct, so over-optimistic).
+  The format name is case-insensitive.
 
 - `-g G`, `--gap-max=G`: make the consensus sequence from alignment
   columns with <= G% gaps.


=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+lamassemble (1.7.4-1) unstable; urgency=medium
+
+  * New upstream version 1.7.4
+  * d/control: declare compliance to standards version 4.7.2.
+  * d/control: drop redundant Rules-Requires-Root: no.
+  * d/watch: convert to v5 Gitlab template.
+
+ -- Étienne Mollier <emollier at debian.org>  Sat, 15 Nov 2025 17:34:15 +0100
+
 lamassemble (1.7.2-2) unstable; urgency=medium
 
   * d/t/d/lama-tests.out: freshen output with python3.12. (Closes: #1074521)


=====================================
debian/control
=====================================
@@ -8,11 +8,10 @@ Build-Depends:
  dh-sequence-python3,
  python3-all,
  python3-setuptools,
-Standards-Version: 4.7.0
+Standards-Version: 4.7.2
 Vcs-Browser: https://salsa.debian.org/med-team/lamassemble
 Vcs-Git: https://salsa.debian.org/med-team/lamassemble.git
 Homepage: https://gitlab.com/mcfrith/lamassemble
-Rules-Requires-Root: no
 
 Package: lamassemble
 Architecture: all


=====================================
debian/watch
=====================================
@@ -1,5 +1,4 @@
-version=4
+Version: 5
 
-opts="mode=git" \
-https://gitlab.com/mcfrith/lamassemble.git \
-refs/tags/v?@ANY_VERSION@
+Template: Gitlab
+Dist: https://gitlab.com/mcfrith/lamassemble


=====================================
lamassemble
=====================================
@@ -1,4 +1,4 @@
-#! /usr/bin/env python
+#! /usr/bin/env python3
 # Author: Martin C. Frith 2019
 # SPDX-License-Identifier: MIT
 


=====================================
setup.py
=====================================
@@ -1,6 +1,6 @@
 import setuptools
 
-commitInfo = " (grafted, HEAD, tag: 1.7.2)".strip("( )").split()
+commitInfo = " (grafted, HEAD, tag: 1.7.4)".strip("( )").split()
 version = commitInfo[commitInfo.index("tag:") + 1].rstrip(",")
 
 setuptools.setup(



View it on GitLab: https://salsa.debian.org/med-team/lamassemble/-/compare/b408a5517df0b9e6234ed02dfa4747eacc2176fc...975f8a75c9c91ed0cb5c9116e601b313c73d30d1

-- 
View it on GitLab: https://salsa.debian.org/med-team/lamassemble/-/compare/b408a5517df0b9e6234ed02dfa4747eacc2176fc...975f8a75c9c91ed0cb5c9116e601b313c73d30d1
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