[med-svn] [Git][med-team/lamassemble][upstream] New upstream version 1.7.4

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch upstream at Debian Med / lamassemble


Commits:
7963cf80 by Étienne Mollier at 2025-11-15T17:30:49+01:00
New upstream version 1.7.4
- - - - -


3 changed files:

- README.md
- lamassemble
- setup.py


Changes:

=====================================
README.md
=====================================
@@ -98,9 +98,9 @@ similarities by increasing option `-m` (and/or decreasing `-u` or `-W`).
 - `-c`, `--consensus`: just make a consensus, of already-aligned sequences.
 
 - `-f FMT`, `--format=FMT`: consensus output format, fasta/fa or
-  fastq/fq.  Fastq shows the error probability of each base (assuming
-  the alignment is correct, so over-optimistic).  The format name is
-  case-insensitive.
+  fastq/fq.  Fastq shows -10 log<sub>10</sub> [error probability] of
+  each base (assuming the alignment is correct, so over-optimistic).
+  The format name is case-insensitive.
 
 - `-g G`, `--gap-max=G`: make the consensus sequence from alignment
   columns with <= G% gaps.


=====================================
lamassemble
=====================================
@@ -1,4 +1,4 @@
-#! /usr/bin/env python
+#! /usr/bin/env python3
 # Author: Martin C. Frith 2019
 # SPDX-License-Identifier: MIT
 


=====================================
setup.py
=====================================
@@ -1,6 +1,6 @@
 import setuptools
 
-commitInfo = " (grafted, HEAD, tag: 1.7.2)".strip("( )").split()
+commitInfo = " (grafted, HEAD, tag: 1.7.4)".strip("( )").split()
 version = commitInfo[commitInfo.index("tag:") + 1].rstrip(",")
 
 setuptools.setup(



View it on GitLab: https://salsa.debian.org/med-team/lamassemble/-/commit/7963cf809ba5188de3ac189327cbc6fcef13aec1

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View it on GitLab: https://salsa.debian.org/med-team/lamassemble/-/commit/7963cf809ba5188de3ac189327cbc6fcef13aec1
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