[med-svn] [Git][med-team/sambamba][master] 11 commits: Build-Depends: architecture-is-64-bit, architecture-is-little-endian
Santiago Vila (@sanvila)
gitlab at salsa.debian.org
Sun Nov 16 15:12:15 GMT 2025
Santiago Vila pushed to branch master at Debian Med / sambamba
Commits:
57d266bd by Andreas Tille at 2024-04-16T20:09:45+02:00
Build-Depends: architecture-is-64-bit, architecture-is-little-endian
- - - - -
80312e8f by Andreas Tille at 2024-04-16T20:09:56+02:00
routine-update: Standards-Version: 4.7.0
- - - - -
e66b6b0a by Andreas Tille at 2024-04-16T18:10:14+00:00
Set upstream metadata fields: Repository.
Changes-By: lintian-brush
- - - - -
56d5b476 by Andreas Tille at 2024-04-16T20:17:52+02:00
Build-Depends: s/pkg-config/pkgconf/
- - - - -
30ab47ca by Andreas Tille at 2024-04-16T20:20:03+02:00
Upload to unstable
- - - - -
6a1f6ab0 by Santiago Vila at 2025-11-16T15:30:00+01:00
Refresh 2to3.patch.
- - - - -
a718c97b by Sudip Mukherjee at 2025-11-16T15:35:00+01:00
Apply upstream fix for missing break to fix FTBFS. Closes: #1119779.
- - - - -
35a0c474 by Santiago Vila at 2025-11-16T15:40:00+01:00
d/control: Drop "Rules-Requires-Root: no" (default).
- - - - -
4ac9a329 by Santiago Vila at 2025-11-16T15:45:00+01:00
d/control: Drop "Priority: optional" (default).
- - - - -
288c2c50 by Santiago Vila at 2025-11-16T15:50:00+01:00
d/control: Update standards-version.
- - - - -
b120d575 by Santiago Vila at 2025-11-16T15:55:00+01:00
Upload for unstable as 1.0.1+dfsg-3
- - - - -
6 changed files:
- debian/changelog
- debian/control
- debian/patches/2to3.patch
- + debian/patches/missing-break.patch
- debian/patches/series
- debian/upstream/metadata
Changes:
=====================================
debian/changelog
=====================================
@@ -1,9 +1,28 @@
-sambamba (1.0.1+dfsg-3) UNRELEASED; urgency=medium
+sambamba (1.0.1+dfsg-3) unstable; urgency=medium
+ * Team upload.
+
+ [ Sudip Mukherjee ]
+ * Apply upstream fix for missing break to fix FTBFS. Closes: #1119779.
+
+ [ Santiago Vila ]
+ * d/control: Drop "Rules-Requires-Root: no" (default).
+ * d/control: Drop "Priority: optional" (default).
+ * d/control: Update standards-version.
+
+ -- Santiago Vila <sanvila at debian.org> Sun, 16 Nov 2025 15:55:00 +0100
+
+sambamba (1.0.1+dfsg-2) unstable; urgency=medium
+
+ * Build-Depends: architecture-is-64-bit, architecture-is-little-endian
+ Closes: #1067959
* Drop unneeded copyright paragraph
* Drop unused patches
+ * Standards-Version: 4.7.0 (routine-update)
+ * Set upstream metadata fields: Repository.
+ * Build-Depends: s/pkg-config/pkgconf/
- -- Andreas Tille <tille at debian.org> Mon, 21 Aug 2023 19:47:58 +0200
+ -- Andreas Tille <tille at debian.org> Tue, 16 Apr 2024 20:18:00 +0200
sambamba (1.0.1+dfsg-1) unstable; urgency=medium
=====================================
debian/control
=====================================
@@ -2,12 +2,13 @@ Source: sambamba
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Andreas Tille <tille at debian.org>
Section: science
-Priority: optional
Build-Depends: debhelper-compat (= 13),
+ architecture-is-64-bit,
+ architecture-is-little-endian,
dh-dlang,
libhts-dev,
meson,
- pkg-config,
+ pkgconf,
python3,
shunit2 <!nocheck>,
zlib1g-dev,
@@ -20,11 +21,10 @@ Build-Depends: debhelper-compat (= 13),
libdeflate-dev,
liblzma-dev,
debhelper
-Standards-Version: 4.6.2
+Standards-Version: 4.7.2
Vcs-Browser: https://salsa.debian.org/med-team/sambamba
Vcs-Git: https://salsa.debian.org/med-team/sambamba.git
Homepage: https://github.com/lomereiter/sambamba
-Rules-Requires-Root: no
Package: sambamba
Architecture: any
=====================================
debian/patches/2to3.patch
=====================================
@@ -5,7 +5,7 @@ Last-Update: Tue, 17 Dec 2019 21:03:13 +0100
--- a/RELEASE-NOTES.md
+++ b/RELEASE-NOTES.md
-@@ -110,7 +110,7 @@ Generation 3 Sep 25 2018 09:39:08
+@@ -122,7 +122,7 @@
branch: origin/master
commit: 932839ff124ff3b0dd3070914fb1c5beec69bf32
@@ -16,7 +16,7 @@ Last-Update: Tue, 17 Dec 2019 21:03:13 +0100
for x in `ldd bin/sambamba|cut -d ' ' -f 3` ; do realpath $x ; done
--- a/gen_ldc_version_info.py
+++ b/gen_ldc_version_info.py
-@@ -18,7 +18,7 @@ if not match:
+@@ -18,7 +18,7 @@
sys.exit("ERROR: failed to generated LDC version information")
print("module utils.ldc_version_info_;")
@@ -27,7 +27,7 @@ Last-Update: Tue, 17 Dec 2019 21:03:13 +0100
print("immutable {0}_VERSION_STRING = \"{1}\";".format(component, version))
--- a/test/test_depth.py
+++ b/test/test_depth.py
-@@ -97,14 +97,14 @@ def compareResults(report, expected, pre
+@@ -97,14 +97,14 @@
fn_expected = prefix + "expected_report.txt"
saveRegionReport(report, fn_failed)
saveRegionReport(expected, fn_expected)
=====================================
debian/patches/missing-break.patch
=====================================
@@ -0,0 +1,16 @@
+Description: stream.d: add missing break
+Author: Pjotr Prins <pjotr.public01 at thebird.nl>
+Origin: upstream, https://github.com/biod/sambamba/commit/5fdcf6f3015cb17b805514397223f7513bc92613
+Bug-Debian: https://bugs.debian.org/1119779
+Last-Update: 2025-11-16
+
+--- a/BioD/bio/core/utils/stream.d
++++ b/BioD/bio/core/utils/stream.d
+@@ -29,6 +29,7 @@
+ break;
+ case "r+", "r+b", "rb+":
+ result = FileMode.In | FileMode.Out; // 1100
++ break;
+ case "w", "wb":
+ result = FileMode.OutNew; // 0110
+ break;
=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
2to3.patch
+missing-break.patch
=====================================
debian/upstream/metadata
=====================================
@@ -27,5 +27,5 @@ Registry:
Entry: sambamba
- Name: guix
Entry: sambamba
-Repository: https://github.com/lomereiter/sambamba.git
+Repository: https://github.com/biod/sambamba.git
Repository-Browse: https://github.com/biod/sambamba
View it on GitLab: https://salsa.debian.org/med-team/sambamba/-/compare/efac35204237ade9f1cc66707ada88771910119b...b120d575e7c46cbf71138ce4613311329f41bbb4
--
View it on GitLab: https://salsa.debian.org/med-team/sambamba/-/compare/efac35204237ade9f1cc66707ada88771910119b...b120d575e7c46cbf71138ce4613311329f41bbb4
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