[med-svn] [Git][med-team/ltrsift][master] 7 commits: Refresh patches.

[Santiago Vila (@sanvila)]

Santiago Vila pushed to branch master at Debian Med / ltrsift


Commits:
f5878ed6 by Santiago Vila at 2025-11-20T07:06:00+01:00
Refresh patches.

- - - - -
268b98dc by Santiago Vila at 2025-11-20T07:07:00+01:00
d/rules: Do not recompress sample_data/dmel-2L-chromosome-r5.8.fasta.gz. Closes: #1048669.

- - - - -
caddd044 by Santiago Vila at 2025-11-20T07:08:00+01:00
d/control: Drop "Rules-Requires-Root: no" (default).

- - - - -
fdb0bea0 by Santiago Vila at 2025-11-20T07:09:00+01:00
d/control: Drop "Priority: optional" (default).

- - - - -
51ddf5ba by Santiago Vila at 2025-11-20T07:10:00+01:00
d/control: Update standards-version.

- - - - -
6c642465 by Santiago Vila at 2025-11-20T07:11:00+01:00
Add debian/salsa-ci.yml.

- - - - -
516c6a35 by Santiago Vila at 2025-11-20T07:12:00+01:00
Upload for unstable as 1.0.2-11

- - - - -


9 changed files:

- debian/changelog
- debian/control
- debian/patches/build_on_64bit → debian/patches/build_on_64bit.patch
- debian/patches/no-binary-in-examples.patch
- debian/patches/series
- debian/patches/spelling.patch
- debian/patches/use_deterministic_file_order → debian/patches/use_deterministic_file_order.patch
- debian/rules
- + debian/salsa-ci.yml


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,16 @@
+ltrsift (1.0.2-11) unstable; urgency=medium
+
+  * Team upload.
+  * Refresh patches.
+  * d/rules: Do not recompress sample_data/dmel-2L-chromosome-r5.8.fasta.gz.
+    Fixes "fails to build source after successful build". Closes: #1048669.
+  * d/control: Drop "Rules-Requires-Root: no" (default).
+  * d/control: Drop "Priority: optional" (default).
+  * d/control: Update standards-version.
+  * Add debian/salsa-ci.yml.
+
+ -- Santiago Vila <sanvila at debian.org>  Thu, 20 Nov 2025 07:12:00 +0100
+
 ltrsift (1.0.2-10) unstable; urgency=medium
 
   [ Matthias Klose ]


=====================================
debian/control
=====================================
@@ -2,16 +2,14 @@ Source: ltrsift
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Sascha Steinbiss <satta at debian.org>
 Section: science
-Priority: optional
 Build-Depends: debhelper-compat (= 13),
                libgenometools0-dev,
                libgtk2.0-dev,
                libglib2.0-dev
-Standards-Version: 4.6.2
+Standards-Version: 4.7.2
 Vcs-Browser: https://salsa.debian.org/med-team/ltrsift
 Vcs-Git: https://salsa.debian.org/med-team/ltrsift.git
 Homepage: https://www.zbh.uni-hamburg.de/en/forschung/gi/software/ltrsift.html
-Rules-Requires-Root: no
 
 Package: ltrsift
 Architecture: any


=====================================
debian/patches/build_on_64bit → debian/patches/build_on_64bit.patch
=====================================
@@ -1,4 +1,6 @@
 Description: do not add -m64 for 64bit archs
+Author: Sascha Steinbiss <satta at debian.org>
+
 --- a/Makefile
 +++ b/Makefile
 @@ -16,6 +16,7 @@


=====================================
debian/patches/no-binary-in-examples.patch
=====================================
@@ -1,3 +1,6 @@
+Description: Remove ltrsift-encode from example data
+Author: Sascha Steinbiss <satta at debian.org>
+
 --- a/Makefile
 +++ b/Makefile
 @@ -40,10 +40,6 @@


=====================================
debian/patches/series
=====================================
@@ -1,4 +1,4 @@
-build_on_64bit
-use_deterministic_file_order
+build_on_64bit.patch
+use_deterministic_file_order.patch
 spelling.patch
 no-binary-in-examples.patch


=====================================
debian/patches/spelling.patch
=====================================
@@ -1,10 +1,10 @@
 Description: Fix spelling
 Author: Andreas Tille <tille at debian.org>
-Last-Update: Wed, 11 Jul 2018 20:48:12 +0200
+Last-Update: 2018-07-11
 
 --- a/src/menubar.c
 +++ b/src/menubar.c
-@@ -1218,7 +1218,7 @@ static void help_about_activate(GT_UNUSE
+@@ -1218,7 +1218,7 @@
      else if (err->domain == G_FILE_ERROR)
        g_warning("GFileError: %s\n", err->message);
      else


=====================================
debian/patches/use_deterministic_file_order → debian/patches/use_deterministic_file_order.patch
=====================================
@@ -1,4 +1,6 @@
 Description: Use_deterministic_file_order
+Author: Sascha Steinbiss <satta at debian.org>
+
 --- a/Makefile
 +++ b/Makefile
 @@ -11,24 +11,12 @@


=====================================
debian/rules
=====================================
@@ -34,8 +34,6 @@ override_dh_auto_test:
 	#dh_auto_test -- useshared=yes x32=$(X32) 64bit=$(64BIT) testthreads=5
 
 override_dh_auto_install:
-	gunzip sample_data/dmel-2L-chromosome-r5.8.fasta.gz
-	gzip -n -9 sample_data/dmel-2L-chromosome-r5.8.fasta
 	dh_auto_install -- 64bit=$(64BIT) errorcheck=no prefix=$(DESTDIR)/usr
 
 override_dh_installdocs:


=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,3 @@
+---
+include:
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/recipes/debian.yml



View it on GitLab: https://salsa.debian.org/med-team/ltrsift/-/compare/95e7a09745408a9ad0b22cfc3f60da066d5bfcb7...516c6a3531ab919ca77264c70f8d90e793f14a75

-- 
View it on GitLab: https://salsa.debian.org/med-team/ltrsift/-/compare/95e7a09745408a9ad0b22cfc3f60da066d5bfcb7...516c6a3531ab919ca77264c70f8d90e793f14a75
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