[med-svn] [Git][med-team/dnarrange][master] 3 commits: d/gbp.conf: pristine-tar=true

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / dnarrange


Commits:
aa386ef0 by Nilesh Patra at 2025-11-26T01:39:23+05:30
d/gbp.conf: pristine-tar=true

- - - - -
afe58d8f by Nilesh Patra at 2025-11-26T01:45:34+05:30
Add patch to fix tests

- - - - -
7221ae1d by Nilesh Patra at 2025-11-26T01:45:49+05:30
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/gbp.conf
- + debian/patches/series
- + debian/patches/update-test-out.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+dnarrange (1.6.3-2) unstable; urgency=medium
+
+  * Team Upload.
+  * d/gbp.conf: pristine-tar=true
+  * Add patch to fix tests
+
+ -- Nilesh Patra <nilesh at debian.org>  Wed, 26 Nov 2025 01:45:39 +0530
+
 dnarrange (1.6.3-1) unstable; urgency=medium
 
   * Team Upload.


=====================================
debian/gbp.conf
=====================================
@@ -1,5 +1,6 @@
 [DEFAULT]
 component=['debian-tests-data']
+pristine-tar=true
 
 [import-orig]
 filter=.gitattributes


=====================================
debian/patches/series
=====================================
@@ -0,0 +1 @@
+update-test-out.patch


=====================================
debian/patches/update-test-out.patch
=====================================
@@ -0,0 +1,27 @@
+Description: Update .out files
+Author: Nilesh Patra <nilesh at iki.fi>
+Forwarded: not-needed, this is due to a fall-out with not updating test files with new upstream release
+Last-Update: 2025-11-26
+--- a/debian-tests-data/merge-tests.out
++++ b/debian-tests-data/merge-tests.out
+@@ -13,6 +13,7 @@
+ 
+   LAST options:
+     -P P             number of parallel threads (default=1)
++    -u RY            use ~1 per this many initial matches
+     -W W             use minimum positions in length-W windows (default=19)
+     -m M             max initial matches per query position (default=5)
+     -z Z             max gap length (default=30)
+--- a/debian-tests-data/tests.out
++++ b/debian-tests-data/tests.out
+@@ -22,8 +22,10 @@
+   -m PROB, --max-mismap=PROB
+                         discard any alignment with mismap probability > PROB
+                         (default=1.0)
++  --insert=NAME         find insertions of the sequence with this name
+   --shrink              shrink the output
+   -v, --verbose         show progress messages
++  -w W, --width=W       line-wrap width of group summary lines (default=79)
+ 
+ TEST dnarrange alns.maf
+ # dnarrange alns.maf



View it on GitLab: https://salsa.debian.org/med-team/dnarrange/-/compare/ea1395279324b85762312115c08fc296e1186e59...7221ae1d85c517f94ec3aea108eb843c9ff68dc1

-- 
View it on GitLab: https://salsa.debian.org/med-team/dnarrange/-/compare/ea1395279324b85762312115c08fc296e1186e59...7221ae1d85c517f94ec3aea108eb843c9ff68dc1
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