[med-svn] [Git][med-team/pbbam][master] 7 commits: d/control: build depends on libboost-iostreams-dev.

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / pbbam


Commits:
bda93a02 by Étienne Mollier at 2025-10-05T23:46:09+02:00
d/control: build depends on libboost-iostreams-dev.

Closes: #1117414

- - - - -
0923c896 by Étienne Mollier at 2025-10-05T23:46:41+02:00
d/control: build depends on pkgconf.

- - - - -
879294fe by Étienne Mollier at 2025-10-05T23:47:34+02:00
d/patches/*: normalize Last-Update timestamp.

- - - - -
570b4a7f by Étienne Mollier at 2025-10-05T23:55:21+02:00
d/watch: convert to watch file version 5.

- - - - -
627942da by Étienne Mollier at 2025-10-05T23:55:51+02:00
d/control: declare compliance to standards version 4.7.2.

- - - - -
e5aa26cb by Étienne Mollier at 2025-10-05T23:56:07+02:00
d/control: drop redundant Rules-Requires-Root: no.

- - - - -
89c74f3d by Étienne Mollier at 2025-10-05T23:56:53+02:00
d/changelog: ready for upload to unstable.

- - - - -


6 changed files:

- debian/changelog
- debian/control
- debian/patches/python3.patch
- debian/patches/results_with_latest_samtools.patch
- debian/patches/use_debian_packaged_python3-cram.patch
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,15 @@
+pbbam (2.4.0+dfsg-2) unstable; urgency=medium
+
+  * Team upload.
+  * d/control: build depends on libboost-iostreams-dev. (Closes: #1117414)
+  * d/control: build depends on pkgconf.
+  * d/patches/*: normalize Last-Update timestamp.
+  * d/watch: convert to watch file version 5.
+  * d/control: declare compliance to standards version 4.7.2.
+  * d/control: drop redundant Rules-Requires-Root: no.
+
+ -- Étienne Mollier <emollier at debian.org>  Sun, 05 Oct 2025 23:56:29 +0200
+
 pbbam (2.4.0+dfsg-1) unstable; urgency=medium
 
   * New upstream version


=====================================
debian/control
=====================================
@@ -7,9 +7,10 @@ Build-Depends: debhelper-compat (= 13),
                dh-exec,
                d-shlibs,
                meson,
-               pkg-config,
+               pkgconf,
                cmake,
                libboost-dev,
+               libboost-iostreams-dev,
                zlib1g-dev,
                libssl-dev,
                libhts-dev,
@@ -17,11 +18,10 @@ Build-Depends: debhelper-compat (= 13),
                python3-cram,
                libgtest-dev <!nocheck>,
                samtools <!nocheck>
-Standards-Version: 4.6.2
+Standards-Version: 4.7.2
 Vcs-Browser: https://salsa.debian.org/med-team/pbbam
 Vcs-Git: https://salsa.debian.org/med-team/pbbam.git
 Homepage: https://pbbam.readthedocs.org/en/latest/index.html
-Rules-Requires-Root: no
 
 Package: pbbamtools
 Architecture: any


=====================================
debian/patches/python3.patch
=====================================
@@ -1,5 +1,5 @@
 Author: Andreas Tille <tille at debian.org>
-Last-Update: Sun, 04 Aug 2019 09:15:35 +0200
+Last-Update: 2019-08-04
 Description: Use Python3 in build time test suite
 
 --- a/tests/scripts/generate_data.py


=====================================
debian/patches/results_with_latest_samtools.patch
=====================================
@@ -1,6 +1,6 @@
 Description: Adapt test results to latest samtools
 Author: Andreas Tille <tille at debian.org>
-Last-Update: Fri, 13 Dec 2019 21:50:03 +0100
+Last-Update: 2019-12-13
 
 --- a/tests/src/cram/pbmerge_pacbio_ordering.t.in
 +++ b/tests/src/cram/pbmerge_pacbio_ordering.t.in


=====================================
debian/patches/use_debian_packaged_python3-cram.patch
=====================================
@@ -1,5 +1,5 @@
 Author: Andreas Tille <tille at debian.org>
-Last-Update: Sun, 04 Aug 2019 09:15:35 +0200
+Last-Update: 2019-08-04
 Description: Use python3-cram instead of cram code copy
 
 --- pbbam.orig/tests/meson.build


=====================================
debian/watch
=====================================
@@ -1,4 +1,12 @@
-version=4
+Version: 5
 
-opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz,filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE at -$1.tar.gz%" \
-  https://github.com/PacificBiosciences/pbbam/tags .*/v?@ANY_VERSION@@ARCHIVE_EXT@
+Source: https://api.github.com/repos/PacificBiosciences/pbbam/git/matching-refs/tags/
+Matching-Pattern: https://api.github.com/repos/[^/]+/[^/]+/git/refs/tags/v at ANY_VERSION@
+Download-Url-Mangle: s%(api.github.com/repos/[^/]+/[^/]+)/git/refs/%$1/tarball/refs/%g
+Filenamemangle: s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE at -$1.tar.gz%
+Search-Mode: plain
+Pgp-Mode: plain
+Compression: xz
+Repack: yes
+Repacksuffix: +dfsg
+Dversionmangle: s/\+dfsg//g



View it on GitLab: https://salsa.debian.org/med-team/pbbam/-/compare/c057a98c54a07403361c88dd3f061d2f1f43427a...89c74f3d8268c86eaea6d8673f676c5302e8f194

-- 
View it on GitLab: https://salsa.debian.org/med-team/pbbam/-/compare/c057a98c54a07403361c88dd3f061d2f1f43427a...89c74f3d8268c86eaea6d8673f676c5302e8f194
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